RetrogeneDB ID:

retro_ogar_308

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:AAQR03196246.1:1040..1421(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000027967
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000006922
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_308
GGCATCTCTCGGGACAACTGGCACAAGCGCCGCAAGACCGGGGGCAAGAGAAAGCCATACCACAAGAAGCGGAAGTATGA
GTTGGGACGCCCCGCAGCTAACACTAAGATTGGCCCCCGCCGAATACATACCGTCCGTGTTCGAGGAGGTAACAAGAAAT
ACCGTGCCCTGAGGCTGGACGTTGGAAACTTCTCTTGGGGCTCAGAGTGTTGTACTAGGAAAACAAGGATCATTGATGTT
GTCTACAATGCATCTAATAATGAGCTGGTTCGTACCAAGACCTTGGTGAAGAACTGCATTGTGCTTATTGATAGCACACC
ATACCGACAGTGGTATGAGTCCCACTATGCACTGCCTCTGGGACGCAAGAAAGGAGCAAAG

ORF - retro_ogar_308 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 77.44 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSEC
GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSEC
RetrocopyGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSEC
ParentalCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAK
CTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAK
RetrocopyCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_308 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 35 parental genes, and 220 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000156971 retrocopy
Ailuropoda melanoleuca ENSAMEG000000141473 retrocopies
Bos taurus ENSBTAG000000152852 retrocopies
Canis familiaris ENSCAFG000000047458 retrocopies
Choloepus hoffmanni ENSCHOG0000000878510 retrocopies
Callithrix jacchus ENSCJAG000000041975 retrocopies
Cavia porcellus ENSCPOG000000007233 retrocopies
Dasypus novemcinctus ENSDNOG000000252363 retrocopies
Dipodomys ordii ENSDORG000000092871 retrocopy
Echinops telfairi ENSETEG0000000400213 retrocopies
Felis catus ENSFCAG000000229964 retrocopies
Homo sapiens ENSG000001429378 retrocopies
Gorilla gorilla ENSGGOG000000056455 retrocopies
Loxodonta africana ENSLAFG000000275963 retrocopies
Macropus eugenii ENSMEUG000000013881 retrocopy
Microcebus murinus ENSMICG000000080244 retrocopies
Myotis lucifugus ENSMLUG0000000155930 retrocopies
Macaca mulatta ENSMMUG000000152702 retrocopies
Monodelphis domestica ENSMODG000000283891 retrocopy
Mustela putorius furoENSMPUG000000134856 retrocopies
Mus musculus ENSMUSG0000004767533 retrocopies
Nomascus leucogenys ENSNLEG000000141471 retrocopy
Oryctolagus cuniculus ENSOCUG000000124761 retrocopy
Otolemur garnettii ENSOGAG00000006922 16 retrocopies
Pongo abelii ENSPPYG000000014261 retrocopy
Pan troglodytes ENSPTRG000000006591 retrocopy
Pteropus vampyrus ENSPVAG0000000985910 retrocopies
Rattus norvegicus ENSRNOG000000187682 retrocopies
Sorex araneus ENSSARG000000008991 retrocopy
Sarcophilus harrisii ENSSHAG000000001115 retrocopies
Sus scrofa ENSSSCG000000039304 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000063223 retrocopies
Tupaia belangeri ENSTBEG0000000041820 retrocopies
Tarsius syrichta ENSTSYG000000055255 retrocopies
Tursiops truncatus ENSTTRG000000033884 retrocopies



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