RetrogeneDB ID: | retro_cfam_2139 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:29100075..29100600(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS8 | ||
Ensembl ID: | ENSCAFG00000004745 | ||
Aliases: | None | ||
Description: | ribosomal protein S8 [Source:HGNC Symbol;Acc:10441] |
Percent Identity: | 71.19 % |
Parental protein coverage: | 84.62 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | AANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIV |
AANTKIGP.R.HTVR..G.NKKY.AL.LD.GNF.WGSEC...K.RII...Y..SNNELV.TKTLVKNCIV | |
Retrocopy | AANTKIGPHRTHTVRIWGVNKKYYALELDMGNF-WGSECFMCKIRIIGIGYSVSNNELVCTKTLVKNCIV |
Parental | LIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKR-SKKIQKKYDERKKNAKISSLLEEQFQQGKL |
..DSTPY.QW..SHYAL.LG.KK.AKLTPEEEE.......SKKIQKKYDERKKN.KISSLLEE.F.Q..L | |
Retrocopy | T-DSTPYQQW*QSHYALFLGLKKEAKLTPEEEELFXXXX*SKKIQKKYDERKKNTKISSLLEEEFYQHRL |
Parental | LACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK |
L.CI..R..QCG.ADGYVL.GK.LE..L.KIKA.KGK | |
Retrocopy | LVCITLRLVQCGQADGYVLLGKMLES*LSKIKAWKGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 459 .42 RPM |
SRP017611_brain | 0 .00 RPM | 158 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 1224 .13 RPM |
SRP017611_liver | 0 .00 RPM | 281 .50 RPM |