RetrogeneDB ID: | retro_rnor_222 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:89827219..89827846(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000005017 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps8 | ||
Ensembl ID: | ENSRNOG00000018768 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S8 [Source:UniProtKB/Swiss-Prot;Acc:P62243] |
Percent Identity: | 95.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSE |
MGISR.NWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGP.RIHTVRVRG.NKKYRALRLDVGNF.WGSE | |
Retrocopy | MGISRNNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPCRIHTVRVRGDNKKYRALRLDVGNFFWGSE |
Parental | CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKK |
CCT.KTR.IDVVYNASNNELVRTKT.VKNC.VLIDS.PYRQWYESHYALPLGRKKGAKLTPEEEEILNKK | |
Retrocopy | CCTCKTRTIDVVYNASNNELVRTKTPVKNCLVLIDSAPYRQWYESHYALPLGRKKGAKLTPEEEEILNKK |
Parental | RSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK |
RSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK | |
Retrocopy | RSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 92 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 115 .91 RPM |
SRP017611_liver | 0 .00 RPM | 93 .33 RPM |