Parental gene:

RPS8, ENSSSCG00000003930

Aliases:None
Description:ribosomal protein S8 [Source:HGNC Symbol;Acc:10441]
Organism:Pig (Sus scrofa)
Coordinates:6:154027004..154029181(+)


>ENSSSCG00000003930
GTAGGCATCTCTCGGGACAACTGGCACAAGCGCCGCAAGACTGGGGGCAAGAGAAAGCCCTACCACAAGAAGCGGAAGTA
TGAGCTGGGACGCCCCGCTGCAAACACCAAGATTGGCCCTCGCCGCATACACACAGTCCGTGTGCGGGGAGGTAACAAGA
AGTACCGGGCCTTGAGGCTGGACGTGGGGAACTTCTCCTGGGGCTCCGAGTGTTGCACACGAAAGACGAGGATTATTGAC
GTTGTGTACAACGCATCCAACAATGAACTGGTCCGTACCAAGACCCTGGTGAAGAACTGCATTGTGCTCATTGACAGCAC
CCCGTACCGACAGTGGTACGAGTCCCACTACGCGCTGCCCCTGGGTCGCAAGAAGGGGGCCAAGTTGACTCCTGAGGAGG
AAGAGATTTTAAACAAAAAGCGATCAAAGAAAATTCAGAAGAAGTATGATGAAAGGAAAAAGAATGCCAAAATCAGCAGT
CTCCTAGAGGAGCAGTTCCAGCAGGGCAAGCTTCTTGCGTGCATCGCCTCAAGACCAGGCCAGTGTGGCCGAGCAGATGG
CTACGTGCTAGAGGGCAAGGAGCTGGAGTTCTATCTGAGGAAAATCAAGGCCCGGAAAGGCAAATGA

Library Parental gene expression (RPM)
SRP014902_placenta 1463 .63 RPM
SRP014902_testis 1361 .14 RPM
SRP018288_heart 687 .58 RPM
SRP018288_kidney 536 .86 RPM
SRP018288_liver 556 .33 RPM
SRP018288_lung 667 .98 RPM
SRP018856_adipose 3099 .43 RPM
SRP035408_brain 769 .65 RPM
SRP035408_liver 753 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014147 ortholog_one2one 3 retrogenes
retro_amel_1883, retro_amel_373, retro_amel_972,
Canis familiaris ENSCAFG00000004745 possible_ortholog 8 retrogenes
retro_cfam_1336, retro_cfam_1662, retro_cfam_1730, retro_cfam_2139, retro_cfam_2177, retro_cfam_261, retro_cfam_589, retro_cfam_791,
Callithrix jacchus ENSCJAG00000004197 possible_ortholog 5 retrogenes
retro_cjac_1068, retro_cjac_181, retro_cjac_3138, retro_cjac_6, retro_cjac_951,
Dipodomys ordii ENSDORG00000009287 possible_ortholog 1 retrogene
retro_dord_429,
Felis catus ENSFCAG00000022996 possible_ortholog 4 retrogenes
retro_fcat_1222, retro_fcat_200, retro_fcat_456, retro_fcat_962,
Gorilla gorilla ENSGGOG00000005645 possible_ortholog 5 retrogenes
retro_ggor_1127, retro_ggor_1170, retro_ggor_1357, retro_ggor_1465, retro_ggor_556,
Macropus eugenii ENSMEUG00000001388 ortholog_one2one 1 retrogene
retro_meug_119,
Myotis lucifugus ENSMLUG00000001559 ortholog_one2one 30 retrogenes
retro_mluc_1114, retro_mluc_1132, retro_mluc_1165, retro_mluc_1277, retro_mluc_1288, retro_mluc_1418, retro_mluc_1467, retro_mluc_1476, retro_mluc_1486, retro_mluc_1634, retro_mluc_1656, retro_mluc_1689, retro_mluc_1808, retro_mluc_1911, retro_mluc_1938, retro_mluc_2043, retro_mluc_2055, retro_mluc_2085, retro_mluc_2111, retro_mluc_2153, retro_mluc_2182, retro_mluc_2209, retro_mluc_2414, retro_mluc_460, retro_mluc_662, retro_mluc_730, retro_mluc_773, retro_mluc_820, retro_mluc_821, retro_mluc_906,
Macaca mulatta ENSMMUG00000015270 possible_ortholog 2 retrogenes
retro_mmul_275, retro_mmul_70,
Mustela putorius furo ENSMPUG00000013485 ortholog_one2one 6 retrogenes
retro_mputfur_334, retro_mputfur_337, retro_mputfur_493, retro_mputfur_780, retro_mputfur_908, retro_mputfur_986,
Nomascus leucogenys ENSNLEG00000014147 possible_ortholog 1 retrogene
retro_nleu_34,
Oryctolagus cuniculus ENSOCUG00000012476 ortholog_one2one 1 retrogene
retro_ocun_168,
Otolemur garnettii ENSOGAG00000006922 possible_ortholog 16 retrogenes
retro_ogar_1156, retro_ogar_1746, retro_ogar_1895, retro_ogar_2501, retro_ogar_2529, retro_ogar_2556, retro_ogar_2699, retro_ogar_2723, retro_ogar_2947, retro_ogar_308, retro_ogar_3291, retro_ogar_3436, retro_ogar_394, retro_ogar_521, retro_ogar_730, retro_ogar_805,
Pongo abelii ENSPPYG00000001426 possible_ortholog 1 retrogene
retro_pabe_147,
Pan troglodytes ENSPTRG00000000659 possible_ortholog 1 retrogene
retro_ptro_30,
Rattus norvegicus ENSRNOG00000018768 possible_ortholog 2 retrogenes
retro_rnor_222, retro_rnor_235,
Sarcophilus harrisii ENSSHAG00000000111 ortholog_one2one 5 retrogenes
retro_shar_408, retro_shar_472, retro_shar_480, retro_shar_636, retro_shar_667,
Tupaia belangeri ENSTBEG00000000418 ortholog_one2one 20 retrogenes
retro_tbel_1066, retro_tbel_1537, retro_tbel_1538, retro_tbel_163, retro_tbel_1699, retro_tbel_2356, retro_tbel_244, retro_tbel_2580, retro_tbel_3058, retro_tbel_3230, retro_tbel_3478, retro_tbel_3905, retro_tbel_3950, retro_tbel_4241, retro_tbel_4250, retro_tbel_4530, retro_tbel_552, retro_tbel_803, retro_tbel_827, retro_tbel_934,
Tarsius syrichta ENSTSYG00000005525 ortholog_one2one 5 retrogenes
retro_tsyr_1412, retro_tsyr_1507, retro_tsyr_2176, retro_tsyr_552, retro_tsyr_734,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_353 68.38 64.90
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2. retro_sscr_550 71.93 53.37
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3. retro_sscr_607 70.56 99.04
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4. retro_sscr_919 76.58 52.40
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Download FASTA sequences of all ENSSSCG00000003930 retrocopies