RetrogeneDB ID: | retro_amel_670 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192562.1:29703..29979(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000015747 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN1 | ||
Ensembl ID: | ENSAMEG00000014100 | ||
Aliases: | None | ||
Description: | high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984] |
Percent Identity: | 71.74 % |
Parental protein coverage: | 94.85 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EGAAKEEPKRRSARLSAKPAPAKVETKPKKAAGKDKSSDKKVQTKGKRGAKGKQAEVANQGTKEDLPAEN |
.GA.KE.PK.R..RLSAKPA.AKVETK..KA.GKDKSSDKKVQT..K.GAKG.QAE.ANQ.TK.DL..E. | |
Retrocopy | KGAGKEKPKMRLERLSAKPASAKVETKSNKAIGKDKSSDKKVQTRRKKGAKGNQAEMANQETK*DLRVEI |
Parental | GETKTEESPASDEAGEKEAKSD |
.E...EES.ASDE.GEKEAKSD | |
Retrocopy | RENENEESLASDESGEKEAKSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |