Parental gene:

HMGN1, ENSECAG00000019029

Aliases:None
Description:high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984]
Organism:Horse (Equus caballus)
Coordinates:26:35358647..35364028(-)


>ENSECAG00000019029
TTCCCCCCGCAGGTCAGCTCCGCCGAGGGCGCGGCGAAGGAGGAGCCCAAGCGGAGATCGGCGAGGTTGTCGGCTAAACC
CGCGCCTGCAAAAGTGGAAACGAAGCCCAAAAAGGTGGCGGGAAAGGATAAATCTTCAGACAAAAAAGTGCAAACAAAAG
GGAAAAGGGGAGCAAAGGGAAAACAAGCCGAAGTGGCTAACCAAGAGACTAAAGAAGACTTACCTGCAGAAAACGGAGAG
ACTAAAAACGAGGAGAGTGCAGCCTCTGATGAAGCAGGAGAGAAAGAAGCCAAGTCTGATTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 18 .72 RPM
SRP021940_embryo 92 .42 RPM
SRP021940_cerebellum 13 .29 RPM
SRP021940_testis 24 .04 RPM
SRP021940_placental_villous 22 .66 RPM
SRP021940_articular_cartilage 11 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014100 ortholog_one2one 11 retrogenes
retro_amel_1103, retro_amel_1157, retro_amel_1307, retro_amel_1378, retro_amel_1580, retro_amel_1839, retro_amel_349, retro_amel_352, retro_amel_408, retro_amel_439, retro_amel_670,
Bos taurus ENSBTAG00000018768 possible_ortholog 12 retrogenes
retro_btau_1178, retro_btau_1475, retro_btau_1560, retro_btau_1746, retro_btau_1801, retro_btau_388, retro_btau_504, retro_btau_572, retro_btau_607, retro_btau_617, retro_btau_897, retro_btau_928,
Cavia porcellus ENSCPOG00000002336 possible_ortholog 7 retrogenes
retro_cpor_1129, retro_cpor_1389, retro_cpor_334, retro_cpor_349, retro_cpor_4, retro_cpor_884, retro_cpor_949,
Homo sapiens ENSG00000205581 ortholog_one2one 7 retrogenes
retro_hsap_1097, retro_hsap_1418, retro_hsap_1581, retro_hsap_1758, retro_hsap_1874, retro_hsap_3370, retro_hsap_762,
Monodelphis domestica ENSMODG00000020972 ortholog_one2many 5 retrogenes
retro_mdom_1085, retro_mdom_109, retro_mdom_284, retro_mdom_755, retro_mdom_88,
Otolemur garnettii ENSOGAG00000010329 ortholog_one2many 35 retrogenes
retro_ogar_1062, retro_ogar_1186, retro_ogar_1245, retro_ogar_1304, retro_ogar_1355, retro_ogar_1437, retro_ogar_1527, retro_ogar_1529, retro_ogar_175, retro_ogar_1812, retro_ogar_1901, retro_ogar_1932, retro_ogar_2057, retro_ogar_2311, retro_ogar_2325, retro_ogar_2522, retro_ogar_2523, retro_ogar_266, retro_ogar_2712, retro_ogar_2729, retro_ogar_278, retro_ogar_2913, retro_ogar_2964, retro_ogar_3095, retro_ogar_3133, retro_ogar_3138, retro_ogar_3155, retro_ogar_333, retro_ogar_3354, retro_ogar_370, retro_ogar_393, retro_ogar_657, retro_ogar_699, retro_ogar_723, retro_ogar_958,
Pongo abelii ENSPPYG00000011426 ortholog_one2many 25 retrogenes
retro_pabe_1066, retro_pabe_1149, retro_pabe_1172, retro_pabe_1190, retro_pabe_123, retro_pabe_1264, retro_pabe_1302, retro_pabe_1504, retro_pabe_1604, retro_pabe_1842, retro_pabe_2152, retro_pabe_2211, retro_pabe_2284, retro_pabe_2380, retro_pabe_251, retro_pabe_2518, retro_pabe_2771, retro_pabe_3086, retro_pabe_3648, retro_pabe_3825, retro_pabe_504, retro_pabe_698, retro_pabe_699, retro_pabe_702, retro_pabe_760,
Pan troglodytes ENSPTRG00000031426 ortholog_one2many 22 retrogenes
retro_ptro_1256, retro_ptro_1299, retro_ptro_1301, retro_ptro_1454, retro_ptro_1556, retro_ptro_1740, retro_ptro_1821, retro_ptro_1830, retro_ptro_2058, retro_ptro_2290, retro_ptro_2559, retro_ptro_2716, retro_ptro_3119, retro_ptro_3278, retro_ptro_363, retro_ptro_463, retro_ptro_586, retro_ptro_61, retro_ptro_637, retro_ptro_696, retro_ptro_970, retro_ptro_980,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_285 67.35 97.00
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2. retro_ecab_362 51.76 82.00
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3. retro_ecab_800 56.96 79.00
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4. retro_ecab_848 52.81 88.00
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5. retro_ecab_1130 64.21 94.00
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Download FASTA sequences of all ENSECAG00000019029 retrocopies