Parental gene:

HMGN1, ENSAMEG00000014100

Aliases:None
Description:high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984]
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL193825.1:215437..220583(-)


>ENSAMEG00000014100
CAGGTCAGCTCCGCCGAGGGGGCGGCGAAGGAGGAGCCCAAGAGGAGGTCGGCGAGGTTGTCAGCTAAACCTGCTCCTGC
GAAAGTGGAAACGAAGCCAAAAAAGGCGGCAGGAAAGGATAAATCTTCAGACAAAAAAGTGCAAACAAAGGGGAAAAGGG
GAGCAAAGGGAAAACAGGCTGAAGTGGCTAACCAAGGAACGAAAGAAGACTTGCCTGCAGAAAATGGAGAAACTAAAACT
GAGGAGAGTCCAGCCTCCGATGAAGCAGGAGAGAAAGAAGCCAAGTCTGAT

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018768 possible_ortholog 12 retrogenes
retro_btau_1178, retro_btau_1475, retro_btau_1560, retro_btau_1746, retro_btau_1801, retro_btau_388, retro_btau_504, retro_btau_572, retro_btau_607, retro_btau_617, retro_btau_897, retro_btau_928,
Cavia porcellus ENSCPOG00000002336 possible_ortholog 7 retrogenes
retro_cpor_1129, retro_cpor_1389, retro_cpor_334, retro_cpor_349, retro_cpor_4, retro_cpor_884, retro_cpor_949,
Equus caballus ENSECAG00000019029 ortholog_one2one 5 retrogenes
retro_ecab_1130, retro_ecab_285, retro_ecab_362, retro_ecab_800, retro_ecab_848,
Homo sapiens ENSG00000205581 ortholog_one2one 7 retrogenes
retro_hsap_1097, retro_hsap_1418, retro_hsap_1581, retro_hsap_1758, retro_hsap_1874, retro_hsap_3370, retro_hsap_762,
Monodelphis domestica ENSMODG00000020972 ortholog_one2many 5 retrogenes
retro_mdom_1085, retro_mdom_109, retro_mdom_284, retro_mdom_755, retro_mdom_88,
Otolemur garnettii ENSOGAG00000010329 ortholog_one2many 35 retrogenes
retro_ogar_1062, retro_ogar_1186, retro_ogar_1245, retro_ogar_1304, retro_ogar_1355, retro_ogar_1437, retro_ogar_1527, retro_ogar_1529, retro_ogar_175, retro_ogar_1812, retro_ogar_1901, retro_ogar_1932, retro_ogar_2057, retro_ogar_2311, retro_ogar_2325, retro_ogar_2522, retro_ogar_2523, retro_ogar_266, retro_ogar_2712, retro_ogar_2729, retro_ogar_278, retro_ogar_2913, retro_ogar_2964, retro_ogar_3095, retro_ogar_3133, retro_ogar_3138, retro_ogar_3155, retro_ogar_333, retro_ogar_3354, retro_ogar_370, retro_ogar_393, retro_ogar_657, retro_ogar_699, retro_ogar_723, retro_ogar_958,
Pongo abelii ENSPPYG00000011426 ortholog_one2many 25 retrogenes
retro_pabe_1066, retro_pabe_1149, retro_pabe_1172, retro_pabe_1190, retro_pabe_123, retro_pabe_1264, retro_pabe_1302, retro_pabe_1504, retro_pabe_1604, retro_pabe_1842, retro_pabe_2152, retro_pabe_2211, retro_pabe_2284, retro_pabe_2380, retro_pabe_251, retro_pabe_2518, retro_pabe_2771, retro_pabe_3086, retro_pabe_3648, retro_pabe_3825, retro_pabe_504, retro_pabe_698, retro_pabe_699, retro_pabe_702, retro_pabe_760,
Pan troglodytes ENSPTRG00000031426 ortholog_one2many 22 retrogenes
retro_ptro_1256, retro_ptro_1299, retro_ptro_1301, retro_ptro_1454, retro_ptro_1556, retro_ptro_1740, retro_ptro_1821, retro_ptro_1830, retro_ptro_2058, retro_ptro_2290, retro_ptro_2559, retro_ptro_2716, retro_ptro_3119, retro_ptro_3278, retro_ptro_363, retro_ptro_463, retro_ptro_586, retro_ptro_61, retro_ptro_637, retro_ptro_696, retro_ptro_970, retro_ptro_980,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_349 77.42 94.85
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2. retro_amel_352 77.08 96.91
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3. retro_amel_408 61.62 100.00
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4. retro_amel_439 85.29 70.10
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5. retro_amel_670 71.74 94.85
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6. retro_amel_1103 54.29 70.10
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7. retro_amel_1157 62.63 100.00
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8. retro_amel_1307 70.15 68.04
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9. retro_amel_1378 74.49 100.00
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10. retro_amel_1580 64.62 65.98
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11. retro_amel_1839 56.57 100.00
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Download FASTA sequences of all ENSAMEG00000014100 retrocopies