RetrogeneDB ID: | retro_ecab_1130 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:105343875..105344150(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN1 | ||
Ensembl ID: | ENSECAG00000019029 | ||
Aliases: | None | ||
Description: | high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984] |
Percent Identity: | 64.21 % |
Parental protein coverage: | 94. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QVSSAEGAAKEEPKRRSARLSAKPAPAKVETKPKKVAGKDKSSDKKVQTKGKRGAKGKQAEVANQETKED |
.V.S.EG..K.EPKR...RLSAK..PAKVET.PKK.A.KDK.SD.KV.TKGKR...GKQAE..N.ETK.D | |
Retrocopy | KVNSVEGVVKGEPKRL-VRLSAKSTPAKVETMPKKAARKDKLSDQKVRTKGKRRRRGKQAEMVN*ETK-D |
Parental | LPAENGE-TKNEESAASDEAGEKEA |
..AEN.E.T.NE...AS.EAG.KEA | |
Retrocopy | WHAENRE<TENEQNPASNEAGVKEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 11 .81 RPM |
SRP021940_cerebellum | 0 .00 RPM | 13 .29 RPM |
SRP021940_embryo | 0 .00 RPM | 92 .42 RPM |
SRP021940_placental_villous | 0 .00 RPM | 22 .66 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 18 .72 RPM |
SRP021940_testis | 0 .00 RPM | 24 .04 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_1801 |
Canis familiaris | retro_cfam_2202 |