RetrogeneDB ID: | retro_ecab_362 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 16:45933568..45933815(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN1 | ||
Ensembl ID: | ENSECAG00000019029 | ||
Aliases: | None | ||
Description: | high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984] |
Percent Identity: | 51.76 % |
Parental protein coverage: | 82. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | QVSSAEGAAKEEPKRRSARLSAKPAPAKVETK-PKKVAGKDKSSDKKVQT-KGKRGAKGKQAEVANQ-ET |
Q.....G....E..R.SA.........K.....PKK..GKDKSSDK.VQT.KGKRGAKGKQA.V.NQ.E. | |
Retrocopy | QLRGGHGGGTQEMARLSAKPAPAKVKTKPKKE>PKKAVGKDKSSDKNVQT>KGKRGAKGKQAGVTNQ<EP |
Parental | KEDLPAENGETKNEE |
KED.PAEN......E | |
Retrocopy | KEDFPAENRDSDGQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 11 .81 RPM |
SRP021940_cerebellum | 0 .00 RPM | 13 .29 RPM |
SRP021940_embryo | 0 .00 RPM | 92 .42 RPM |
SRP021940_placental_villous | 0 .00 RPM | 22 .66 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 18 .72 RPM |
SRP021940_testis | 0 .00 RPM | 24 .04 RPM |