RetrogeneDB ID: | retro_btau_1638 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 8:17425702..17426167(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V0C | ||
Ensembl ID: | ENSBTAG00000026428 | ||
Aliases: | ATP6V0C, PLP | ||
Description: | V-type proton ATPase 16 kDa proteolipid subunit [Source:UniProtKB/Swiss-Prot;Acc:P23956] |
Percent Identity: | 98.06 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSEAKNGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGL |
MSEAKNGPE.ASFFAVMGASAA.VFSA.GAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGL | |
Retrocopy | MSEAKNGPE*ASFFAVMGASAATVFSARGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGL |
Parental | VVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEV |
VVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEV | |
Retrocopy | VVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEV |
Parental | LGLYGLIVALILSTK |
LGLYGLIVALILSTK | |
Retrocopy | LGLYGLIVALILSTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 11 .17 RPM |
ERP005899_muscle | 0 .84 RPM | 100 .99 RPM |
SRP017611_brain | 0 .23 RPM | 163 .90 RPM |
SRP017611_kidney | 0 .12 RPM | 83 .34 RPM |
SRP017611_liver | 0 .08 RPM | 62 .75 RPM |
SRP030211_testis | 2 .76 RPM | 70 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000026428 | 1 retrocopy |
retro_btau_1638 ,
|
Homo sapiens | ENSG00000185883 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028600 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004597 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000026715 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000015439 | 5 retrocopies | |
Mus musculus | ENSMUSG00000024121 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009416 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000015060 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007653 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000006542 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014251 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013420 | 3 retrocopies | |
Drosophila melanogaster | FBgn0262736 | 3 retrocopies | |
Caenorhabditis elegans | R10E11.2 | 2 retrocopies |