RetrogeneDB ID: | retro_cele_1 | ||
Retrocopylocation | Organism: | Caenorhabditis elegans | |
Coordinates: | III:9781253..9781763(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | R10E11.8 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | vha-2 | ||
Ensembl ID: | R10E11.2 | ||
Aliases: | None | ||
Description: | V-type proton ATPase 16 kDa proteolipid subunit 2/3 [Source:UniProtKB/Swiss-Prot;Acc:P34546] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 95.03 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ERAAYAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMV |
E.A.Y.PFFG..G..SA..F...G.AYGTAK...GI.SM.V.RP.L.MK..IPV.MAGI..IYGLVVA.. | |
Retrocopy | EQAMYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVAVI |
Parental | LKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLG |
..GKV..A.A.Y..N..F...A.GL.CGLCGLGAGYAIGI.GDAGVR...QQPR.FVGMILILIF.EVLG | |
Retrocopy | VSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQPRMFVGMILILIFAEVLG |
Parental | LYGMIVALILGTS |
LYGMIVALILG.. | |
Retrocopy | LYGMIVALILGAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000026428 | 1 retrocopy | |
Homo sapiens | ENSG00000185883 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028600 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004597 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000026715 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000015439 | 5 retrocopies | |
Mus musculus | ENSMUSG00000024121 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009416 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000015060 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007653 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000006542 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014251 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013420 | 3 retrocopies | |
Drosophila melanogaster | FBgn0262736 | 3 retrocopies | |
Caenorhabditis elegans | R10E11.2 | 2 retrocopies |
retro_cele_1 , retro_cele_5,
|