RetrogeneDB ID: | retro_hsap_1798 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 17:4760261..4760666(-) | ||
Located in intron of: | ENSG00000141503 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000230201 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V0C | ||
Ensembl ID: | ENSG00000185883 | ||
Aliases: | ATP6V0C, ATP6C, ATP6L, ATPL, VATL, VPPC, Vma3 | ||
Description: | ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c [Source:HGNC Symbol;Acc:855] |
Percent Identity: | 75.54 % |
Parental protein coverage: | 89.03 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQI-MKSIIPVVMAGIIAIYGLVV |
S...PEYA..F...GA.A.MV.S.LGAA.G.AK.GTGI.AMSVM.PE.I.MKSIIPVVMAGII.IYGLV. | |
Retrocopy | SNNSPEYALVFTISGAMATMVSSGLGAACGMAKNGTGIMAMSVMWPELIHMKSIIPVVMAGIITIYGLVA |
Parental | AVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVL |
AV..ANSLNDD.SLY.SFLQLGAGLS....GLAAGFAI.IVGD.G..GTAQQPRLFVGMILILIFA.VL | |
Retrocopy | AVPPANSLNDDNSLYSSFLQLGAGLS----GLAAGFAIVIVGDTGKCGTAQQPRLFVGMILILIFAKVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .08 RPM | 14 .69 RPM |
bodymap2_adrenal | 0 .31 RPM | 11 .05 RPM |
bodymap2_brain | 0 .26 RPM | 59 .58 RPM |
bodymap2_breast | 0 .08 RPM | 11 .98 RPM |
bodymap2_colon | 0 .00 RPM | 13 .15 RPM |
bodymap2_heart | 0 .07 RPM | 3 .51 RPM |
bodymap2_kidney | 0 .04 RPM | 12 .49 RPM |
bodymap2_liver | 0 .00 RPM | 3 .84 RPM |
bodymap2_lung | 0 .00 RPM | 9 .07 RPM |
bodymap2_lymph_node | 0 .00 RPM | 7 .71 RPM |
bodymap2_ovary | 0 .02 RPM | 11 .43 RPM |
bodymap2_prostate | 0 .00 RPM | 5 .06 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 8 .62 RPM |
bodymap2_testis | 0 .09 RPM | 17 .89 RPM |
bodymap2_thyroid | 0 .00 RPM | 19 .11 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 13 .53 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002DBB | POLR2A | 17:4761588..4761788 |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1323 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000026428 | 1 retrocopy | |
Homo sapiens | ENSG00000185883 | 2 retrocopies |
retro_hsap_1798 , retro_hsap_3462,
|
Gorilla gorilla | ENSGGOG00000028600 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004597 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000026715 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000015439 | 5 retrocopies | |
Mus musculus | ENSMUSG00000024121 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009416 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000015060 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007653 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000006542 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014251 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013420 | 3 retrocopies | |
Drosophila melanogaster | FBgn0262736 | 3 retrocopies | |
Caenorhabditis elegans | R10E11.2 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .07 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .04 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .06 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .04 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .06 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .06 RPM |