RetrogeneDB ID: | retro_itri_691 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393312.1:4851669..4852136(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000023192 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000013420 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.9 % |
Parental protein coverage: | 99.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SETKNSPEYASFFAVMGASSAMIFSALGAAY--GTAKSGT-GIAAMSVMRPELIMKSIIPVVMAGIIAIY |
S.TKNSPEYASFFAVMGASS.MIFSALGA.Y..G....G..G...MSVMRPELIMKSIIPVVMAGIIAIY | |
Retrocopy | SKTKNSPEYASFFAVMGASSPMIFSALGAVYGMGKSGAGM<GSHVMSVMRPELIMKSIIPVVMAGIIAIY |
Parental | GLVVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFA |
.LVVAVLIANSLNDGISLYRSFLQLGAGLS.GLSGLAAGFAIGIVGDA.V.GTAQQPRLFVGMILILIFA | |
Retrocopy | SLVVAVLIANSLNDGISLYRSFLQLGAGLSIGLSGLAAGFAIGIVGDASVWGTAQQPRLFVGMILILIFA |
Parental | EVLGLYGLIVALILSTK |
EVLGLYGL.VALILSTK | |
Retrocopy | EVLGLYGLMVALILSTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000026428 | 1 retrocopy | |
Homo sapiens | ENSG00000185883 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028600 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004597 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000026715 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000015439 | 5 retrocopies | |
Mus musculus | ENSMUSG00000024121 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009416 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000015060 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007653 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000006542 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014251 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013420 | 3 retrocopies |
retro_itri_119, retro_itri_387, retro_itri_691 ,
|
Drosophila melanogaster | FBgn0262736 | 3 retrocopies | |
Caenorhabditis elegans | R10E11.2 | 2 retrocopies |