RetrogeneDB ID:

retro_nleu_2770

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397423.1:2981888..2982248(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP6V0C
Ensembl ID:ENSNLEG00000009416
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2770
TCCAACAACAGCCCCGAGTATGCTTTGGTTTTCACCATCTCGGCTGCTGTGGCCACCACGGTCTCCAGTGGCCTGGGTGC
TGCCTATGGCATGGCCAAGAATGGCACCGGCATTGTGGCCATGTCTGTCATGTGGCCGGAGCCGATCATGAAGCCCATCA
TCCCAGTGGTCATGGCTGGTATCATCACCATCTATGGCCTAGTGGCGGCTGTCCCCCCTGCCAGCTCCCTGAATGATGAC
AACAGTCTCTATAGCAGTTTCCTCCAGCTGGGCGCTGGCCTGAGTGGCCTGGCAGCCGGCTTTGCCATCGTTATTGTGGG
GGACACTGGCAAGTGTGGCACTGCCCAGCAGCCCTATTTG

ORF - retro_nleu_2770 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.16 %
Parental protein coverage: 80. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA
S...PEYA..F....A.A..V.S.LGAAYG.AK.GTGI.AMSVM.PE.IMK.IIPVVMAGII.IYGLV.A
RetrocopySNNSPEYALVFTISAAVATTVSSGLGAAYGMAKNGTGIVAMSVMWPEPIMKPIIPVVMAGIITIYGLVAA
ParentalVLIANSLNDDITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL
V..A.SLNDD..LY.SFLQLGAGLS....GLAAGFAI.IVGD.G..GTAQQP.L
RetrocopyVPPASSLNDDNSLYSSFLQLGAGLS----GLAAGFAIVIVGDTGKCGTAQQPYL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2770 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 31 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000264281 retrocopy
Homo sapiens ENSG000001858832 retrocopies
Gorilla gorilla ENSGGOG000000286002 retrocopies
Macropus eugenii ENSMEUG000000045972 retrocopies
Myotis lucifugus ENSMLUG000000267152 retrocopies
Monodelphis domestica ENSMODG000000154395 retrocopies
Mus musculus ENSMUSG000000241212 retrocopies
Nomascus leucogenys ENSNLEG00000009416 2 retrocopies
retro_nleu_1692, retro_nleu_2770 ,
Procavia capensis ENSPCAG000000150601 retrocopy
Pan troglodytes ENSPTRG000000076532 retrocopies
Rattus norvegicus ENSRNOG000000065421 retrocopy
Sarcophilus harrisii ENSSHAG000000142511 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000134203 retrocopies
Drosophila melanogaster FBgn02627363 retrocopies
Caenorhabditis elegans R10E11.22 retrocopies



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