RetrogeneDB ID: | retro_rnor_118 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:90359223..90359598(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000049929 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Atp6v0c | ||
Ensembl ID: | ENSRNOG00000006542 | ||
Aliases: | Atp6v0c, Atp6c, Atp6l | ||
Description: | V-type proton ATPase 16 kDa proteolipid subunit [Source:UniProtKB/Swiss-Prot;Acc:P63081] |
Percent Identity: | 88.14 % |
Parental protein coverage: | 76.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PEYSSFFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA |
P....FFGVMGAS.AMVFSAMGAAYGTAKSGT.IAA..VMRPELI.KSIIPVVMAGIIAI.GLVVAVL.. | |
Retrocopy | PNILRFFGVMGASYAMVFSAMGAAYGTAKSGTDIAAVRVMRPELIIKSIIPVVMAGIIAIHGLVVAVLSD |
Parental | NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQP |
NSLTDGITLYRSFLQLGAG.SVGLSGLAAGF.IGIVGDAGVRGTAQQP | |
Retrocopy | NSLTDGITLYRSFLQLGAGPSVGLSGLAAGFTIGIVGDAGVRGTAQQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 511 .54 RPM |
SRP017611_kidney | 0 .21 RPM | 376 .89 RPM |
SRP017611_liver | 0 .00 RPM | 111 .01 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000026428 | 1 retrocopy | |
Homo sapiens | ENSG00000185883 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028600 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004597 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000026715 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000015439 | 5 retrocopies | |
Mus musculus | ENSMUSG00000024121 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009416 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000015060 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007653 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000006542 | 1 retrocopy |
retro_rnor_118 ,
|
Sarcophilus harrisii | ENSSHAG00000014251 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013420 | 3 retrocopies | |
Drosophila melanogaster | FBgn0262736 | 3 retrocopies | |
Caenorhabditis elegans | R10E11.2 | 2 retrocopies |