RetrogeneDB ID:

retro_dmel_38

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:2R:12835215..12835683(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:FBgn0262513
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Vha16-1
Ensembl ID:FBgn0262736
Aliases:None
Description:Vacuolar H[+] ATPase subunit 16-1 [Source:FlyBase gene name;Acc:FBgn0262736]


Retrocopy-Parental alignment summary:






>retro_dmel_38
ATGGAGCTCTCGTTGGATGAACCGCAATGCGCATCCTTCTTTTGCATCCTGGGTGCCGTGTGCGCCATTGTCTTTTCGAC
ATTGGGAGCCGCCTACGGAACAGCGAAGGCTTCTGTGGGAATCTCTTCGATGTCAATCAAGCATCCGCAGCTGATCATGA
AGGCGATTGTTCCAGTGGTTATGGCTGGCATTATAGCCATTTATGGACTGGTGATCGCGGTCCTGCTTGCTGGATCACTT
AGCAGCCCCTATAGCGCCTACAAGGGTTTCCTAAACCTCAGTGCTGGACTGGCGGTGGGAGTCTCTGGGATGGGGGCTGG
AATTGCTATTGGCGTGGTGGGCGAAGCTGGAGTCCGTGCATCTGCCCAGCAGCCAAAACTCTTTGTGGCCATCATTTTAA
TATTGATATTTGCCGAGGTCTTGGGTCTGTATGGTCTCATAGTGGCCATTTATTTGTTTTCCAAGTAG

ORF - retro_dmel_38 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.95 %
Parental protein coverage: 98.11 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEVSSDNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV
E.S.D.P....FF...GA..AI.FS.LGAAYGTAK...GI..MS...P.LIMK.I.PVVMAGIIAIYGLV
RetrocopyELSLDEPQCASFFCILGAVCAIVFSTLGAAYGTAKASVGISSMSIKHPQLIMKAIVPVVMAGIIAIYGLV
ParentalVAVLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAE
.AVL.AG.L..P..YS.Y.GF..L.AGLAVG.SG..AG.AIG.VG.AGVR..AQQP.LFV..ILILIFAE
RetrocopyIAVLLAGSLSSP--YSAYKGFLNLSAGLAVGVSGMGAGIAIGVVGEAGVRASAQQPKLFVAIILILIFAE
ParentalVLGLYGLIVAIYLYTK
VLGLYGLIVAIYL..K
RetrocopyVLGLYGLIVAIYLFSK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_38 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_38 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 31 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000264281 retrocopy
Homo sapiens ENSG000001858832 retrocopies
Gorilla gorilla ENSGGOG000000286002 retrocopies
Macropus eugenii ENSMEUG000000045972 retrocopies
Myotis lucifugus ENSMLUG000000267152 retrocopies
Monodelphis domestica ENSMODG000000154395 retrocopies
Mus musculus ENSMUSG000000241212 retrocopies
Nomascus leucogenys ENSNLEG000000094162 retrocopies
Procavia capensis ENSPCAG000000150601 retrocopy
Pan troglodytes ENSPTRG000000076532 retrocopies
Rattus norvegicus ENSRNOG000000065421 retrocopy
Sarcophilus harrisii ENSSHAG000000142511 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000134203 retrocopies
Drosophila melanogaster FBgn0262736 3 retrocopies
retro_dmel_3, retro_dmel_38 , retro_dmel_65,
Caenorhabditis elegans R10E11.22 retrocopies



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