RetrogeneDB ID: | retro_shar_194 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834609.1:2574763..2575330(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V0C | ||
Ensembl ID: | ENSSHAG00000014251 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c [Source:HGNC Symbol;Acc:855] |
Percent Identity: | 76.96 % |
Parental protein coverage: | 74.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | RPPAHPPVLYPLPS-PVPPLLLSLCPICLPAYRPR-ADMSESPEYASFFAVMGASAAMVFSALGAAYGTA |
R.P...P...PL...P.P.L.L...PI.LPA.....A.MSE.PEY..FF.V.GA.AAM.FSALGAAYGTA | |
Retrocopy | RSPDFTPTSSPLAALPGPVLSLLPSPIHLPASQAT<AAMSEVPEYSTFFGVLGALAAMIFSALGAAYGTA |
Parental | KSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLTPGITLFKSFLQLGA-GLSVGLSGL |
KSGTGIAAM.VMRP..IMKSIIPV.MAGIIAIYGLVVAVLIAN..TPGI.LFKSFL.LGA.GLSVG.SGL | |
Retrocopy | KSGTGIAAMAVMRPDVIMKSIIPVIMAGIIAIYGLVVAVLIANAVTPGISLFKSFLHLGA>GLSVGPSGL |
Parental | AAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK |
AAGFAI.IVGD.GV.GTAQQPRLFVGMILILIFAEVLGLYGLIVALI.STK | |
Retrocopy | AAGFAIAIVGDSGVWGTAQQPRLFVGMILILIFAEVLGLYGLIVALIFSTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000026428 | 1 retrocopy | |
Homo sapiens | ENSG00000185883 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028600 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004597 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000026715 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000015439 | 5 retrocopies | |
Mus musculus | ENSMUSG00000024121 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009416 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000015060 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007653 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000006542 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014251 | 1 retrocopy |
retro_shar_194 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000013420 | 3 retrocopies | |
Drosophila melanogaster | FBgn0262736 | 3 retrocopies | |
Caenorhabditis elegans | R10E11.2 | 2 retrocopies |