RetrogeneDB ID: | retro_nleu_1692 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397304.1:17093175..17093577(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V0C | ||
Ensembl ID: | ENSNLEG00000009416 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.88 % |
Parental protein coverage: | 83.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSESKSG----PEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIA |
MSESK.G....PEYASFFAVMGAS.AMVFS...AAYGT..SG.GIAAMSVMRPELI.KSIIP.VMAGIIA | |
Retrocopy | MSESKNGLPCPPEYASFFAVMGASPAMVFSSPRAAYGTVESGAGIAAMSVMRPELIIKSIIPAVMAGIIA |
Parental | IYGLVVAVLIANSLNDDITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVG |
IYGLVV.VLI.NS.ND.I.LYRS.LQLGAG.SVGLSGL.AGF.....GD.GVR.T...P..F.G | |
Retrocopy | IYGLVVTVLITNSPNDGISLYRSSLQLGAGRSVGLSGLPAGFVMKFPGDTGVRATVFLPSIFHG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000026428 | 1 retrocopy | |
Homo sapiens | ENSG00000185883 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028600 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004597 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000026715 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000015439 | 5 retrocopies | |
Mus musculus | ENSMUSG00000024121 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009416 | 2 retrocopies |
retro_nleu_1692 , retro_nleu_2770,
|
Procavia capensis | ENSPCAG00000015060 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007653 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000006542 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014251 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013420 | 3 retrocopies | |
Drosophila melanogaster | FBgn0262736 | 3 retrocopies | |
Caenorhabditis elegans | R10E11.2 | 2 retrocopies |