RetrogeneDB ID: | retro_cfam_2044 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:12008063..12008627(+) | ||
Located in intron of: | ENSCAFG00000012150 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18 | ||
Ensembl ID: | ENSCAFG00000003967 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein L18 (RPL18), mRNA. [Source:RefSeq mRNA;Acc:NM_001251958] |
Percent Identity: | 97.34 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKM |
MGVDIRHNKDRKV.RKEPKSQDIYLRLLVKLYR.LARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKM | |
Retrocopy | MGVDIRHNKDRKVWRKEPKSQDIYLRLLVKLYRCLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKM |
Parental | KLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALDSPKGCGTVLLS |
KLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGKILTF.QLALDSPKGCGTVLLS | |
Retrocopy | KLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGKILTFYQLALDSPKGCGTVLLS |
Parental | GPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYKN |
GPRKG.EVYRHFGKAPGTPHSHTKPYVRSKGRKFERARG.RASRGYKN | |
Retrocopy | GPRKGQEVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGLRASRGYKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 188 .66 RPM |
SRP017611_brain | 0 .24 RPM | 62 .08 RPM |
SRP017611_kidney | 0 .46 RPM | 536 .75 RPM |
SRP017611_liver | 0 .29 RPM | 161 .41 RPM |