Parental gene:

RPL18, ENSPVAG00000009524

Aliases:None
Description:ribosomal protein L18 [Source:HGNC Symbol;Acc:10310]
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1909:82393..85952(-)


>ENSPVAG00000009524
ATGGGGGTCGACATCCGCCACAACAAAGACCGAAAGGTTCGGCGCAAGGAGCCCAAGAGCCAGGACATCTACCTAAGGCT
GTTGGTCAAGTTGTACAGGTTTTTAGCCAGACGGACCAACTCCACCTTCAACCAGGTGGTGCTGAAGCGGTTGTTCATGA
GTCGCACCAACCGGCCGCCTCTGTCCCTTTCTCGGATGATCCGGAAGATGAAGCTTCCTGGCCGGGAGGGCAAGACCGCC
GTGGTCGTAGGGACGATAACGGACGATGTGCGCGTCCAGGAGGTCCCCAAGCTCAAGGTGTGTGCACTTCGTGTGAGCAG
CCGTGCCCGGAGCCGCATCCTTAAGGCTGGGGGCAAGATCCTCACCTTTGACCAGCTGGCCCTGGACTCCCCCAAGGGCT
GTGGCACCGTCCTGCTCTCCGGTCCTCGCAAGGGCCGAGAGGTGTACAGGCATTTCGGCAAGGCCCCTGGAACCCCGCAC
AGCCACACCAAACCCTATGTGCGCTCCAAGGGCCGGAAATTTGAGCGAGCCAGAGGCCGTAGGGCCAGCCGCGGCTACAA
AAACTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014872 ortholog_one2one 3 retrogenes
Bos taurus ENSBTAG00000015388 ortholog_one2one 1 retrogene
Canis familiaris ENSCAFG00000003967 ortholog_one2one 7 retrogenes
Choloepus hoffmanni ENSCHOG00000009140 ortholog_one2one 6 retrogenes
Equus caballus ENSECAG00000021927 ortholog_one2one 3 retrogenes
Erinaceus europaeus ENSEEUG00000015872 ortholog_one2one 5 retrogenes
Echinops telfairi ENSETEG00000013157 ortholog_one2one 6 retrogenes
Felis catus ENSFCAG00000008652 ortholog_one2one 4 retrogenes
Gorilla gorilla ENSGGOG00000024878 possible_ortholog 7 retrogenes
Loxodonta africana ENSLAFG00000031267 ortholog_one2one 1 retrogene
Macropus eugenii ENSMEUG00000000640 ortholog_one2one 1 retrogene
Myotis lucifugus ENSMLUG00000009286 ortholog_one2one 12 retrogenes
Macaca mulatta ENSMMUG00000022158 possible_ortholog 3 retrogenes
Monodelphis domestica ENSMODG00000014099 ortholog_one2many 1 retrogene
Mustela putorius furo ENSMPUG00000003891 ortholog_one2many 4 retrogenes
Nomascus leucogenys ENSNLEG00000004537 ortholog_one2one 11 retrogenes
Otolemur garnettii ENSOGAG00000003562 possible_ortholog 16 retrogenes
Oreochromis niloticus ENSONIG00000006539 ortholog_one2one 1 retrogene
Pongo abelii ENSPPYG00000010206 ortholog_one2one 6 retrogenes
Rattus norvegicus ENSRNOG00000021035 possible_ortholog 14 retrogenes
Sarcophilus harrisii ENSSHAG00000006564 ortholog_one2one 2 retrogenes
Sus scrofa ENSSSCG00000025928 ortholog_one2one 5 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000012258 possible_ortholog 5 retrogenes
Tupaia belangeri ENSTBEG00000001594 ortholog_one2one 18 retrogenes
Tursiops truncatus ENSTTRG00000008187 ortholog_one2one 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_101 78.31 98.94
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2. retro_pvam_427 83.72 90.43
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3. retro_pvam_785 59.29 73.94
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4. retro_pvam_883 61.17 53.72
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5. retro_pvam_969 62.14 54.79
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6. retro_pvam_990 67.18 68.62
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7. retro_pvam_1034 70.91 58.51
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8. retro_pvam_1244 63.02 100.00
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9. retro_pvam_1376 62.11 50.53
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10. retro_pvam_1444 71.69 87.77
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Download FASTA sequences of all ENSPVAG00000009524 retrocopies