RetrogeneDB ID: | retro_eeur_381 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_276449:13914..14352(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18 | ||
Ensembl ID: | ENSEEUG00000015872 | ||
Aliases: | None | ||
Description: | ribosomal protein L18 [Source:HGNC Symbol;Acc:10310] |
Percent Identity: | 83.67 % |
Parental protein coverage: | 78.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | TFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKVCALRVTTRARS |
.FN.VVLKRLFMS.TNRPPLSL..MI.KM.LPG.EGKTAVV.GTITD.VRVQEVPKLKVCA..VTT..R. | |
Retrocopy | SFN*VVLKRLFMSLTNRPPLSLPWMIQKMQLPGWEGKTAVV-GTITDNVRVQEVPKLKVCAMCVTTHVRR |
Parental | RILKAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRR |
RILKA.GKIL.FDQLALDSPKGCGTV.LSGP.KGREVYRHF.KAPGTPHSHTKPYV.SKG.KFER.RGRR | |
Retrocopy | RILKARGKILKFDQLALDSPKGCGTVVLSGPPKGREVYRHFSKAPGTPHSHTKPYVCSKGWKFERVRGRR |
Parental | ASRGYKN |
AS.GYKN | |
Retrocopy | ASPGYKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .32 RPM | 71 .39 RPM |
SRP017611_kidney | 0 .19 RPM | 222 .61 RPM |
SRP017611_liver | 0 .00 RPM | 163 .99 RPM |