RetrogeneDB ID: | retro_tbel_126 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1211:104333..104642(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18 | ||
Ensembl ID: | ENSTBEG00000001594 | ||
Aliases: | None | ||
Description: | ribosomal protein L18 [Source:HGNC Symbol;Acc:10310] |
Percent Identity: | 60. % |
Parental protein coverage: | 54.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | HNKDRKVR-RKEPKSQDIYLRLLVKLYRFLARR-TNSTFNQVVLKRLFMSRTNRPPLSLSRMI-QMKLPG |
H.K.RKVR.R.EP.SQDI..RL.V.LY.FLA...TN.TF.QVVL.RLFMSRTNRPPLSLSRMI....... | |
Retrocopy | HHKERKVRQRREPESQDICRRLSVELYQFLAYG<TNCTFSQVVLRRLFMSRTNRPPLSLSRMILKDEVSW |
Parental | PGKQT-AVVVGTITDDVRIQVPKLXVCALRVTSRA |
PGKQ...VV.GT.TDDVR..........L....RA | |
Retrocopy | PGKQN>GVVAGTVTDDVRSGGAQMKSRTLKAGTRA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |