RetrogeneDB ID: | retro_eeur_437 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_302029:548..878(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18 | ||
Ensembl ID: | ENSEEUG00000015872 | ||
Aliases: | None | ||
Description: | ribosomal protein L18 [Source:HGNC Symbol;Acc:10310] |
Percent Identity: | 85.59 % |
Parental protein coverage: | 59.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KTAVVVGTITDDVRVQEVPKLKVCALRVTTRARSRILKAGGKILTFDQLALDSPKGCGTVLLSGPRKGRE |
KTAVV.GTITD.VRVQEVPKLKVCA..VTT..R.RILKA.GKIL.FDQLALDSPKGCGTV.LSGP.KGRE | |
Retrocopy | KTAVV-GTITDNVRVQEVPKLKVCAMCVTTHVRRRILKARGKILKFDQLALDSPKGCGTVVLSGPPKGRE |
Parental | VYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYKN |
VYRHF.KAPGTPHSHTKPYV.SKG.KFER.RGRRAS.GYKN | |
Retrocopy | VYRHFSKAPGTPHSHTKPYVCSKGWKFERVRGRRASPGYKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 71 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 222 .61 RPM |
SRP017611_liver | 0 .00 RPM | 163 .99 RPM |