RetrogeneDB ID: | retro_eeur_176 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_149:9145..9439(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18 | ||
Ensembl ID: | ENSEEUG00000015872 | ||
Aliases: | None | ||
Description: | ribosomal protein L18 [Source:HGNC Symbol;Acc:10310] |
Percent Identity: | 84.69 % |
Parental protein coverage: | 52.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGREGKTAVVVGTITDD |
SQDI.LRLLV..YRFL...TNSTFNQVVLKRLFMSRTNRPPLSLS.MIRKMKLPG.EGK.AVVV.TITDD | |
Retrocopy | SQDICLRLLVRHYRFLVKWTNSTFNQVVLKRLFMSRTNRPPLSLSQMIRKMKLPGQEGKPAVVVRTITDD |
Parental | VRVQEVPKLKVCALRVTTRARSRILKAG |
V..QEVPKLKVCAL.VTT.A.SRILKAG | |
Retrocopy | VCIQEVPKLKVCALHVTTCAHSRILKAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .32 RPM | 71 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 222 .61 RPM |
SRP017611_liver | 0 .32 RPM | 163 .99 RPM |