RetrogeneDB ID: | retro_chof_1892 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_4166:21838..22460(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MDH1 | ||
Ensembl ID: | ENSCHOG00000007281 | ||
Aliases: | None | ||
Description: | malate dehydrogenase 1, NAD (soluble) [Source:HGNC Symbol;Acc:6970] |
Percent Identity: | 80.48 % |
Parental protein coverage: | 62.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VVVVGNPANTN-CLTA-SKSAPSIPKENFSCLTRLDQNRAKSQIALKLGVTADNVKNVIIWGNHSSTQYP |
V.V.G.P..T..CLTA.SKSA.SIPKENFSCLTRLDQN.AKSQIALKLGVTADNVKNVIIWG.HSSTQYP | |
Retrocopy | VSVCGKPSHTT<CLTA<SKSALSIPKENFSCLTRLDQNQAKSQIALKLGVTADNVKNVIIWGSHSSTQYP |
Parental | DVNHAKVKLQGKEVGVYEALKDDSWLKGDFITTVQQRGAAVIKARKLSSAMSAAKAICDHLRDLWFGTPE |
DVNHA.VKLQGKEVG.YEALKDD.W.KGDFITTVQ.RG.A..KARK.SS.MSA.KAICDH.RD..FGTPE | |
Retrocopy | DVNHAEVKLQGKEVGGYEALKDDGWCKGDFITTVQ*RGTAFTKARKPSSTMSAVKAICDHVRDMCFGTPE |
Parental | GEFVSMGVMSDGNSYGIPDDMLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELAEEKETAFEFLSS |
GEFVS..V.S.G.SYGI.DD.L.SFP.VIKNKTWKFVEGLP.N.FS.EK..LTA.ELAE.KETAFEFLSS | |
Retrocopy | GEFVSTDVISNGISYGILDDLLSSFPFVIKNKTWKFVEGLPVNNFSCEKIELTARELAEDKETAFEFLSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019295 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007281 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000007018 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013329 | 2 retrocopies | |
Homo sapiens | ENSG00000014641 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007085 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016504 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006163 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009823 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014487 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012373 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011974 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007690 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001215 | 2 retrocopies |