RetrogeneDB ID:

retro_ogar_741

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873526.1:26793419..26794079(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000014487
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_741
AGTCTTGGAAATGGATCTGTCTTTGGTAAAGAACAGCCTGTAATTCTCGTGCTTTTGGATATTACCCCCATGATGGGTGT
CCTGGATAGTGCCCTAATGGAACTGCAAGACTGCCCTTCCCCTCCTGAAAGATGTCATTGCAACAAAGAAGAGGTTGCCT
TCAAAGACCTGGATGTGGCCATTTTCGTGGGCTCCATGCCAAGAAGAGAAGGCATGGAGAAGAAAGATTTGCTGAAAGCA
AATGTGAAAGTCTTCCTATCCCAGAGTGCAGCCTTGGAGAAATGTGCCAGGAAGTCAGTTAGAGTCATTGTTGTGCGTAA
CCCAACCAGTACCAACTGCCCGACTGCCTCCAACGCAGCTCCATCCAGCCCCAAGGAGAACTTCCCTTGCACCACTCATT
TGGTTCACAACCGAGCTAAATCTCAAATTGCTCTTCAACTTGGTGTGACTGCTGATGATGTAAAGAATCTCATTAACTGA
GGAAATTGTTCCTCAACTCAGTATCCAGATGTCAACCATGTCAAGGTGAAATTGCAAGGAAAGGAAGTTGGTGTTTATGA
AGCTCTGAGAGACGACAGCTGGCTCAAGGGAGAATTCATCACAACCGTGCAGCAGGGTGGTGCTGCTGTCATCAAAGCTC
GAAAACTATCCAGTCTGCTG

ORF - retro_ogar_741 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.73 %
Parental protein coverage: 66.47 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSIGNGSVFGKDQPVILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAILVGSMPR
S.GNGSVFGK.QPVILVLLDITPMMGVLD..LMELQDC..P.........KEE.AFKDLDVAI.VGSMPR
RetrocopySLGNGSVFGKEQPVILVLLDITPMMGVLDSALMELQDC--PSPPERCHCNKEEVAFKDLDVAIFVGSMPR
ParentalREGMERKDLLKANVKIFQSQGAALEKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNR
REGME.KDLLKANVK.F.SQ.AALEK.A.KSV.VIVV.NP..TNC.TAS..APS.PKENF.C.T.L.HNR
RetrocopyREGMEKKDLLKANVKVFLSQSAALEKCARKSVRVIVVRNPTSTNCPTASNAAPSSPKENFPCTTHLVHNR
ParentalAKSQIALKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGA
AKSQIAL.LGVTADDVKN.I..GN.SSTQYPDVNH.KVKLQGKEVGVYEAL.DDSWLKGEFITTVQQ.GA
RetrocopyAKSQIALQLGVTADDVKNLIN*GNCSSTQYPDVNHVKVKLQGKEVGVYEALRDDSWLKGEFITTVQQGGA
ParentalAVIKARKLSSAM
AVIKARKLSS..
RetrocopyAVIKARKLSSLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_741 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 26 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000192951 retrocopy
Choloepus hoffmanni ENSCHOG000000072815 retrocopies
Callithrix jacchus ENSCJAG000000070184 retrocopies
Dasypus novemcinctus ENSDNOG000000133292 retrocopies
Homo sapiens ENSG000000146411 retrocopy
Gorilla gorilla ENSGGOG000000070851 retrocopy
Loxodonta africana ENSLAFG000000165042 retrocopies
Macaca mulatta ENSMMUG000000061632 retrocopies
Nomascus leucogenys ENSNLEG000000098231 retrocopy
Otolemur garnettii ENSOGAG00000014487 1 retrocopy
retro_ogar_741 ,
Pongo abelii ENSPPYG000000123731 retrocopy
Pan troglodytes ENSPTRG000000119741 retrocopy
Sorex araneus ENSSARG000000076901 retrocopy
Sus scrofa ENSSSCG000000257511 retrocopy
Tarsius syrichta ENSTSYG000000012152 retrocopies



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