RetrogeneDB ID: | retro_mmul_2496 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:56076381..56076999(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4256 | ||
Ensembl ID: | ENSMMUG00000006163 | ||
Aliases: | None | ||
Description: | Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F7HSV9] |
Percent Identity: | 69.08 % |
Parental protein coverage: | 71.63 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MMGVLDGVLMELQDCALPLLKDVIATDKEEVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAA |
M..VLDGVLM.LQDCAL.L.KDVIA.DKEE..FKDLDV.ILV.S.PRREGME.KDLLKA.V.IFK.Q.AA | |
Retrocopy | MISVLDGVLMKLQDCALSLWKDVIAADKEELVFKDLDVTILVVSVPRREGMEKKDLLKAHVNIFKCQDAA |
Parental | LDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWG |
L.KY.K..VK.I...NP.NTNCL....SAPSIPKENFS.L..L.HNR..AQI.LKL.VTA..VKNVII.. | |
Retrocopy | LKKYTKMLVKFIIMENPVNTNCLIFFMSAPSIPKENFS*LIHLNHNRDEAQITLKLCVTAENVKNVII*R |
Parental | NHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICD |
..SS.QYP.VNHAK.KLQ.KE..VYEAL.DDSWL..E.....QQ..AAVIKA..LSSAMS..KAI.D | |
Retrocopy | DNSSIQYPYVNHAKEKLQEKEISVYEALIDDSWLR-ENSSCLQQHDAAVIKA*ILSSAMSTMKAISD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 405 .62 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 348 .18 RPM |
SRP007412_cerebellum | 0 .06 RPM | 267 .92 RPM |
SRP007412_heart | 0 .06 RPM | 415 .32 RPM |
SRP007412_kidney | 0 .00 RPM | 289 .78 RPM |
SRP007412_liver | 0 .00 RPM | 90 .37 RPM |
SRP007412_testis | 0 .00 RPM | 20 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019295 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007281 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000007018 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013329 | 2 retrocopies | |
Homo sapiens | ENSG00000014641 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007085 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016504 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006163 | 2 retrocopies |
retro_mmul_1750, retro_mmul_2496 ,
|
Nomascus leucogenys | ENSNLEG00000009823 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014487 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012373 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011974 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007690 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001215 | 2 retrocopies |