Parental gene:

MDH1, ENSDNOG00000013329

Aliases:None
Description:malate dehydrogenase 1, NAD (soluble) [Source:HGNC Symbol;Acc:6970]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_35358:36945..46946(+)


>ENSDNOG00000013329
CCTCTGGTTCTCGTGCTGTTGGATATCACCCCCATGATGGGGGTCCTGGAGGGGGTCCTTATGGAATTGCAAGACTGCGC
ACTTCCTCTCCTGAAAGATATCATCATTACAGATAAAGAAGAAGTTGCCTTCAAAGACTTGGACGTGGCCATTCTTGTGG
GTTCCATGCCAAGAAGGGATGGCATGGAAAGGAAAGATTTACTGAAAGCAAATGTGAAAATCTTCAAAACCCAAGGTGCA
GCCTTGGAAAAATATGCCAAGAAGTCAGTTAAGGTAATTGTTGTGGGAAACCCAGCCAATACTAACTGCCTGACTGCCTC
AAAGTCGGCTCCATCCATCCCCAAGGAAAACTTCAGTTGCTTGACACGTTTGGATCAAAACCGAGCTAAATCTCAAATTG
CTCTTAAACTTGGTGTGCCTGCTGATAACGTAAAGAATGTCATCATCTGGGGAAACCATTCCTCAACTCAGTATCCAGAT
GTCAACCATGCCAAGGTGAAAATGCAAGGAAAAGAAGTTGGTGTTTATGAAGCCCTGAAGGATGACAGCTGGCTTAAGGG
AGACTTCATCACGACTGTGCAGCAGCGTGGCGCTGCCGTCATCAAGGCTCGGAAACTATCCAGTGCGATGTCTGCTGCTA
AAGCCATCTGTGACCATGTCAGAGATATCTGGTTTGGAACCCCAGAGAGGTGCATGAGTNNNNTCTCTGATGGCAACTCC
TATGGCATTCCTGATGATCTGCTCTATTCATTCCCTGTTGTAATCAAGAATAAGACCTGGAAGTTTGTTGAGGGTCTCCC
TATTAATGATTTCTCACGTGAGAAGATGGATCTTACTGCAAAGGAATTGGCAGAAGAAAAAGAAACTGCTTTTGAATTTC
TTAGCTCTGCCTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 354 .32 RPM
SRP012922_cerebellum 301 .88 RPM
SRP012922_heart 929 .05 RPM
SRP012922_kidney 277 .63 RPM
SRP012922_liver 175 .71 RPM
SRP012922_lung 49 .64 RPM
SRP012922_quadricep_muscle 670 .53 RPM
SRP012922_spleen 50 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019295 ortholog_one2one 1 retrogene
retro_btau_466,
Choloepus hoffmanni ENSCHOG00000007281 ortholog_one2one 5 retrogenes
retro_chof_1260, retro_chof_1513, retro_chof_1892, retro_chof_2001, retro_chof_90,
Callithrix jacchus ENSCJAG00000007018 ortholog_one2many 4 retrogenes
retro_cjac_1848, retro_cjac_2407, retro_cjac_2418, retro_cjac_282,
Homo sapiens ENSG00000014641 ortholog_one2one 1 retrogene
retro_hsap_3426,
Gorilla gorilla ENSGGOG00000007085 ortholog_one2one 1 retrogene
retro_ggor_2316,
Loxodonta africana ENSLAFG00000016504 ortholog_one2one 2 retrogenes
retro_lafr_1134, retro_lafr_972,
Macaca mulatta ENSMMUG00000006163 ortholog_one2one 2 retrogenes
retro_mmul_1750, retro_mmul_2496,
Nomascus leucogenys ENSNLEG00000009823 ortholog_one2one 1 retrogene
retro_nleu_1363,
Otolemur garnettii ENSOGAG00000014487 ortholog_one2many 1 retrogene
retro_ogar_741,
Pongo abelii ENSPPYG00000012373 ortholog_one2one 1 retrogene
retro_pabe_2839,
Pan troglodytes ENSPTRG00000011974 ortholog_one2one 1 retrogene
retro_ptro_2326,
Sorex araneus ENSSARG00000007690 ortholog_one2one 1 retrogene
retro_sara_361,
Sus scrofa ENSSSCG00000025751 ortholog_one2many 1 retrogene
retro_sscr_779,
Tarsius syrichta ENSTSYG00000001215 ortholog_one2one 2 retrogenes
retro_tsyr_1790, retro_tsyr_190,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_109 64.81 53.20
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2. retro_dnov_2562 77.16 65.32
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Download FASTA sequences of all ENSDNOG00000013329 retrocopies