RetrogeneDB ID: | retro_nleu_1363 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397291.1:6978451..6979127(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MDH1 | ||
Ensembl ID: | ENSNLEG00000009823 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.12 % |
Parental protein coverage: | 66.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQI |
R......NVKIFK.QGAAL.KY.KK..KVIV.GNPAN.NCLTASK.APSI..ENFSCLT.LDHN....QI | |
Retrocopy | REERFTENVKIFKWQGAALEKYDKKFIKVIVMGNPANINCLTASKLAPSIFNENFSCLTCLDHNQTQVQI |
Parental | ALKLGVTANDVKNVI-IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIK |
.LKLGVTA..VKN...IWGN.S..QYPDVN.AKVKLQGKEV.VYEALK.DSW..GEF...V.Q.GAAVIK | |
Retrocopy | TLKLGVTADNVKNIT>IWGNDSLSQYPDVNQAKVKLQGKEV-VYEALKHDSWPQGEFM-AVRQHGAAVIK |
Parental | ARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVVSDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPIN |
A.K.S.AMS..KAI..H.RDIW.GTP.GE.VS.GV.SD..SYG......YSF.VV.K.KTWKFVE.L.IN | |
Retrocopy | AQKPSRAMSTTKAISNHLRDIWLGTP*GESVSTGVISDSHSYGNSQSSFYSFSVVFK-KTWKFVEALSIN |
Parental | DFSREKMDLTAKELTEEKE |
D.S..KMDLTAKEL...K. | |
Retrocopy | DSSCKKMDLTAKELAGKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019295 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007281 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000007018 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013329 | 2 retrocopies | |
Homo sapiens | ENSG00000014641 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007085 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016504 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006163 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009823 | 1 retrocopy |
retro_nleu_1363 ,
|
Otolemur garnettii | ENSOGAG00000014487 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012373 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011974 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007690 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001215 | 2 retrocopies |