Parental gene:

ENSSSCG00000025751

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:3:82274611..82325849(-)


>ENSSSCG00000025751
ATGTCTGAACCAATCCGAGTGCTTGTGACTGGAGCAGCTGGTCAGATTGCATATTCACTGCTGTACAGTATTGGAAATGG
ATCTGTCTTCGGTAAAGACCAGCCTATCATCCTTGTGCTGTTGGATATCACCCCTATGATGGGTGTCCTGGATGGTGTCC
TGATGGAGCTGCAGGACTGTGCCCTTCCCCTCCTGAAAGATGTCATTGCAACAGATAAAGAAGAGATTGCCTTCAAAGAC
CTGGACGTTGCCATTCTCGTGGGTTCCATGCCAAGAAGGGATGGCATGGAGAGGAAAGATTTACTCAAAGCAAATGTGAA
AATCTTCAAATGCCAGGGTGCTGCCTTGGACAAATATGCTAAGAAGTCAGTTAAGGTCTATCGTGGTGGGAAACCCAGCC
AATACCAACTGCCTGACTGCCTCCAAGTCGGCTCCATCCATTCCCTAGGAGAACTTCAGCTGCTTGACTCGTTTGGATCA
CAACCGAGCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 13 .67 RPM
SRP014902_testis 26 .31 RPM
SRP018856_adipose 80 .77 RPM
SRP018288_kidney 85 .90 RPM
SRP018288_lung 9 .06 RPM
SRP018288_liver 21 .11 RPM
SRP018288_heart 161 .06 RPM
SRP035408_liver 40 .22 RPM
SRP035408_brain 71 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019295 ortholog_one2many 1 retrogene
retro_btau_466,
Choloepus hoffmanni ENSCHOG00000007281 ortholog_one2many 5 retrogenes
retro_chof_1260, retro_chof_1513, retro_chof_1892, retro_chof_2001, retro_chof_90,
Callithrix jacchus ENSCJAG00000007018 ortholog_many2many 4 retrogenes
retro_cjac_1848, retro_cjac_2407, retro_cjac_2418, retro_cjac_282,
Dasypus novemcinctus ENSDNOG00000013329 ortholog_one2many 2 retrogenes
retro_dnov_109, retro_dnov_2562,
Homo sapiens ENSG00000014641 ortholog_one2many 1 retrogene
retro_hsap_3426,
Gorilla gorilla ENSGGOG00000007085 ortholog_one2many 1 retrogene
retro_ggor_2316,
Loxodonta africana ENSLAFG00000016504 ortholog_one2many 2 retrogenes
retro_lafr_1134, retro_lafr_972,
Macaca mulatta ENSMMUG00000006163 ortholog_one2many 2 retrogenes
retro_mmul_1750, retro_mmul_2496,
Nomascus leucogenys ENSNLEG00000009823 ortholog_one2many 1 retrogene
retro_nleu_1363,
Otolemur garnettii ENSOGAG00000014487 ortholog_many2many 1 retrogene
retro_ogar_741,
Pongo abelii ENSPPYG00000012373 ortholog_one2many 1 retrogene
retro_pabe_2839,
Pan troglodytes ENSPTRG00000011974 ortholog_one2many 1 retrogene
retro_ptro_2326,
Sorex araneus ENSSARG00000007690 ortholog_one2many 1 retrogene
retro_sara_361,
Tarsius syrichta ENSTSYG00000001215 ortholog_one2many 2 retrogenes
retro_tsyr_1790, retro_tsyr_190,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_779 73.08 79.14
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Download FASTA sequences of all ENSSSCG00000025751 retrocopies