RetrogeneDB ID: | retro_tsyr_190 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_4948:34595..35267(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MDH1 | ||
Ensembl ID: | ENSTSYG00000001215 | ||
Aliases: | None | ||
Description: | malate dehydrogenase 1, NAD (soluble) [Source:HGNC Symbol;Acc:6970] |
Percent Identity: | 98.66 % |
Parental protein coverage: | 70.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIAT |
SEPIRVLVTGAAGQIAYSLLYSIG.GSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIAT | |
Retrocopy | SEPIRVLVTGAAGQIAYSLLYSIGSGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIAT |
Parental | DKEEIAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKIQGAALEKYAKKSVKVIVVGNPANTNCLTAS |
DKEEIAFKDLDVA.LVGSMPRREGMERKDLLKANVKIFKIQGA.LEKYAKKSVKVIVVGNPANTNCLTAS | |
Retrocopy | DKEEIAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKIQGAPLEKYAKKSVKVIVVGNPANTNCLTAS |
Parental | KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVTLQGKEVGVYE |
KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVTLQGKEVGVYE | |
Retrocopy | KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVTLQGKEVGVYE |
Parental | AIKDDNWLKGEFIT |
AIKDDNWLKGEFIT | |
Retrocopy | AIKDDNWLKGEFIT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019295 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007281 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000007018 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013329 | 2 retrocopies | |
Homo sapiens | ENSG00000014641 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007085 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016504 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006163 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009823 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014487 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012373 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011974 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007690 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001215 | 2 retrocopies |
retro_tsyr_1790, retro_tsyr_190 ,
|