RetrogeneDB ID: | retro_sara_361 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_179674:2819..3818(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MDH1 | ||
Ensembl ID: | ENSSARG00000007690 | ||
Aliases: | None | ||
Description: | malate dehydrogenase 1, NAD (soluble) [Source:HGNC Symbol;Acc:6970] |
Percent Identity: | 60.06 % |
Parental protein coverage: | 99.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SEPVRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLEGVLMELQDCALPLLKDVIAT |
.EP.RVLV.GAAG..A.SLLY....G.VFGK.QPIIL.LLD..P.MGVL.G...ELQ.CALPLL.DV.AT | |
Retrocopy | AEPIRVLVSGAAGNVAHSLLYNLATGTVFGKEQPIILGLLDVPPRMGVLQGLASELQACALPLLRDVVAT |
Parental | DKEEVAFKDLDVAILVGSMPRRDG-MERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA |
D.EE.A..DLDVAIL..S..R.......KDLL.ANVKI....G.ALDKYAK.SV.VIVVG.PA.TNCL.A | |
Retrocopy | DVEELACRDLDVAILLSSQSRKEAALGVKDLLRANVKIYQGHGKALDKYAKRSVRVIVVGHPAHTNCLVA |
Parental | SKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSNDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVY |
SK.APSIP..NF.CLTRLD..RA....A..LGV...DVKNVIIWGNH.S...PD...A.V...G...GV. | |
Retrocopy | SKWAPSIPRQNFTCLTRLDQHRAQVVLAGQLGVPVTDVKNVIIWGNHGSMLFPDASQATVRVRGRQAGVR |
Parental | EAMKNDSWLKGEFISTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGV |
E....D.WL...F....Q....A.........AM..AKAICDHVRD.W.GTP.GEFVSMG..S.GN.YG. | |
Retrocopy | ETLQDDHWLREDFLRSMQPCVPAGALGTQAPRAMATAKAICDHVRDLWQGTPAGEFVSMGVSSHGNPYGL |
Parental | PDDLLYSFPVTIKNKTWKVVEGLPINDFSREKMELTAKELTEEKETAFEFLSS |
PDDL..SFPVT...KTWKVV.GLPI.DFS...ME..AKEL..EKE.A...L.S | |
Retrocopy | PDDLFCSFPVTVQEKTWKVVPGLPISDFSYARMEQAAKELIQEKEMALDLLFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019295 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007281 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000007018 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013329 | 2 retrocopies | |
Homo sapiens | ENSG00000014641 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007085 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016504 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006163 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009823 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014487 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012373 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011974 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007690 | 1 retrocopy |
retro_sara_361 ,
|
Sus scrofa | ENSSSCG00000025751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001215 | 2 retrocopies |