RetrogeneDB ID: | retro_lafr_972 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_54:15482818..15483451(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MDH1 | ||
Ensembl ID: | ENSLAFG00000016504 | ||
Aliases: | None | ||
Description: | Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G3TH55] |
Percent Identity: | 82.94 % |
Parental protein coverage: | 62.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SEPIRVLVTGAAGQIAYSLLYSIGNGSIFGKDQPLILLLLDITPMMGVLEGVLMELQDCALPLLTDI-IA |
SEPIRVLVT.A.GQIAYSLLYSI.NGSIFGKDQPLIL.LLDITP.MGVLEG..MEL.DCALPLL..I.I. | |
Retrocopy | SEPIRVLVTEATGQIAYSLLYSIENGSIFGKDQPLILVLLDITPTMGVLEGDFMELHDCALPLLHYICIT |
Parental | TDKEEVAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTA |
T.KEEV.FKDLDVA.LVGSMPR.EGME.KDLLKANVKIFK.QGAALDKYAKKSVKV.VVG..ANTNCLTA | |
Retrocopy | TYKEEVVFKDLDVAILVGSMPRWEGMEWKDLLKANVKIFKFQGAALDKYAKKSVKVVVVGKSANTNCLTA |
Parental | IKSAPSIPKENFSCLTRLDHNRAIGQIVLKLGVTAKDVKNVIIWGNHSSTQYPDVSHAKVKFQGKEVGVY |
IKSA.SIPKE.FSCL..LD.N.A.GQ.V.KLGVTAKDV.NVIIWGNHSS.QYPDV..AKVKFQGKEVG.. | |
Retrocopy | IKSASSIPKEIFSCLIHLDRN*AVGQTVHKLGVTAKDVRNVIIWGNHSSIQYPDVNRAKVKFQGKEVGSR |
Parental | E |
E | |
Retrocopy | E |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019295 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007281 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000007018 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013329 | 2 retrocopies | |
Homo sapiens | ENSG00000014641 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007085 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016504 | 2 retrocopies |
retro_lafr_1134, retro_lafr_972 ,
|
Macaca mulatta | ENSMMUG00000006163 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009823 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014487 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012373 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011974 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007690 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001215 | 2 retrocopies |