RetrogeneDB ID: | retro_pabe_2839 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:16708746..16709424(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MDH1 | ||
Ensembl ID: | ENSPPYG00000012373 | ||
Aliases: | None | ||
Description: | malate dehydrogenase 1, NAD (soluble) [Source:HGNC Symbol;Acc:6970] |
Percent Identity: | 69.57 % |
Parental protein coverage: | 68.26 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQI |
R......NVKIFK.QGAAL.KY.KK.VKVIV.GNPAN.NCLTASK.APSI..ENFSCLT.LDHN.....I | |
Retrocopy | REERFTENVKIFKWQGAALEKYDKKFVKVIVMGNPANINCLTASKLAPSIFNENFSCLTCLDHNQTQV*I |
Parental | ALKLGVTANDVKNVI-IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIK |
.LKLGVTA..VKN...IWGNHS.TQYPDVN.AKVKLQGKEV.VYEALK.DSW..GEF.T.VQQ.GAAVIK | |
Retrocopy | TLKLGVTADNVKNIT>IWGNHSLTQYPDVNQAKVKLQGKEV-VYEALKHDSWPQGEF-TAVQQHGAAVIK |
Parental | ARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDD-LLYSFPVVIKNKTWKFVEGLPI |
A.K.S.AM....AI..H.RDIW.GTP.GE.VS.GVISD..SYG.P.....YSF.VV.KNKTWKFVE...I | |
Retrocopy | ALKPSRAMFTTRAISNHLRDIWLGTP*GESVSTGVISDSDSYGIPSN<SFYSFSVVFKNKTWKFVEAVSI |
Parental | NDFSREKMDLTAKELTEEKE |
ND.S..KMDLTAKEL...K. | |
Retrocopy | NDSSCKKMDLTAKELAGKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 234 .87 RPM |
SRP007412_cerebellum | 0 .00 RPM | 163 .92 RPM |
SRP007412_heart | 0 .00 RPM | 342 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 109 .85 RPM |
SRP007412_liver | 0 .00 RPM | 62 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3426 |
Pan troglodytes | retro_ptro_2326 |
Gorilla gorilla | retro_ggor_2316 |
Macaca mulatta | retro_mmul_1750 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019295 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007281 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000007018 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013329 | 2 retrocopies | |
Homo sapiens | ENSG00000014641 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007085 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016504 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006163 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009823 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014487 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012373 | 1 retrocopy |
retro_pabe_2839 ,
|
Pan troglodytes | ENSPTRG00000011974 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007690 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001215 | 2 retrocopies |