RetrogeneDB ID: | retro_dnov_109 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_1646:14125..14599(+) | ||
Located in intron of: | ENSDNOG00000017755 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MDH1 | ||
Ensembl ID: | ENSDNOG00000013329 | ||
Aliases: | None | ||
Description: | malate dehydrogenase 1, NAD (soluble) [Source:HGNC Symbol;Acc:6970] |
Percent Identity: | 64.81 % |
Parental protein coverage: | 53.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | LQDCALPLLKDI-IITDKEEVAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFK-TQGAALEKYAKKSV |
LQDC.LPLL.D..IITD.EEVAF..L.V.IL.GSMPR.DGM.RKD.LKA.VKIFK...G..L.KYAKKSV | |
Retrocopy | LQDCELPLLEDV>IITDTEEVAFNSLGVVILKGSMPRGDGMGRKDVLKATVKIFK<NLGPSLQKYAKKSV |
Parental | K-VIVVGNPANTNCLTA-SKSAPSIPKENFSCLTRLDQNRAKSQIALKLGVPADNVKNVIIWGNHSSTQY |
K.V...G.P..T.CLTA..K.A..I.KEN.SCLT..DQN..KS.IAL.LG...D.VKN.IIWGNH.S..Y | |
Retrocopy | K>VVIMGYPTSTSCLTA<LKEALFIWKENLSCLTPFDQN*VKSEIALELGITTDDVKNTIIWGNHFSIHY |
Parental | PDVNHAKVKMQGKEVGVYEALK |
.DV.H.KVK.Q.KE.GVY.AL. | |
Retrocopy | LDVSHTKVKFQEKEDGVYGALR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 354 .32 RPM |
SRP012922_cerebellum | 0 .27 RPM | 301 .88 RPM |
SRP012922_heart | 0 .00 RPM | 929 .05 RPM |
SRP012922_kidney | 0 .00 RPM | 277 .63 RPM |
SRP012922_liver | 0 .15 RPM | 175 .71 RPM |
SRP012922_lung | 0 .15 RPM | 49 .64 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 670 .53 RPM |
SRP012922_spleen | 0 .00 RPM | 50 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019295 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007281 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000007018 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013329 | 2 retrocopies |
retro_dnov_109 , retro_dnov_2562,
|
Homo sapiens | ENSG00000014641 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007085 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016504 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006163 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009823 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014487 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012373 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011974 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007690 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001215 | 2 retrocopies |