RetrogeneDB ID: | retro_dnov_225 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_2733:477033..477472(+) | ||
Located in intron of: | ENSDNOG00000014612 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUT | ||
Ensembl ID: | ENSDNOG00000024791 | ||
Aliases: | None | ||
Description: | deoxyuridine triphosphatase [Source:HGNC Symbol;Acc:3078] |
Percent Identity: | 75.84 % |
Parental protein coverage: | 58.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SAEEGGVRIRFVRLSEHATAPTKGSARAAGFDLYSAYDYTIPPMEKALVKTDIQIALPSGCYGRVXXXXX |
SA.EGGV.I.F..LSEHA.APTKGSA..AGFDLYSA.DYTIPPMEKALVKTD.QIALPSGC.GRV..... | |
Retrocopy | SASEGGVQIPFAWLSEHAKAPTKGSA*TAGFDLYSAHDYTIPPMEKALVKTDVQIALPSGCQGRVAPRSG |
Parental | XXXXXXXXXXXGVIDEDYRGNVGVVLFNFGKEKFEV-KKGDRIAQLICERI-FYPEIEEVQVLDVTERGS |
...........GVIDEDYRGNVGV.LFNFGKEK.EV..KGD.IAQLICE.I.FYPEIEEVQVLDVTER.S | |
Retrocopy | LAAKHSTDVGAGVIDEDYRGNVGVMLFNFGKEKLEV<VKGDWIAQLICEQI<FYPEIEEVQVLDVTERVS |
Parental | GGFGSTGKN |
GGFGST.KN | |
Retrocopy | GGFGSTRKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 32 .87 RPM |
SRP012922_cerebellum | 0 .00 RPM | 13 .06 RPM |
SRP012922_heart | 0 .00 RPM | 10 .44 RPM |
SRP012922_kidney | 0 .00 RPM | 23 .27 RPM |
SRP012922_liver | 0 .00 RPM | 3 .41 RPM |
SRP012922_lung | 0 .00 RPM | 14 .36 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 7 .44 RPM |
SRP012922_spleen | 0 .00 RPM | 73 .37 RPM |