RetrogeneDB ID: | retro_ggor_2974 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:147663570..147664016(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUT | ||
Ensembl ID: | ENSGGOG00000005658 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.97 % |
Parental protein coverage: | 78.57 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | SPSKRARPA-EEGGMQLRFA-RLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGC |
SPSK.A.PA..EG.MQL.FA..LS..A.A...GS...A.Y.LYSAYDYTIP..E.A.VKT....ALP.GC | |
Retrocopy | SPSKQA*PA<QEGSMQLCFA<LLSKNAMALNQGSWLTADYNLYSAYDYTIPSTE*ALVKT----ALPAGC |
Parental | YGRVAPRSGLAAKHFIDIGAGVIDEDYRGNVGVVLFNFGKEKFEV-KKGDRIAQLICERIFYPEIQEVQA |
.G.VA..SGLAAKHFID.GAGV.DE.YRGN.G.V..N.GKE.FEV....D.IAQ..CE.IFYP.I.EVQA | |
Retrocopy | NG*VAQWSGLAAKHFIDTGAGVTDEGYRGNGGAVVLNLGKERFEV>XXXDQIAQVFCEWIFYP*I-EVQA |
Parental | LDDTERGSGGFGSTGKN |
LD.TER.S.G.GSTGKN | |
Retrocopy | LDETERPSEGLGSTGKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 23 .21 RPM |
SRP007412_cerebellum | 0 .04 RPM | 25 .49 RPM |
SRP007412_heart | 0 .00 RPM | 8 .63 RPM |
SRP007412_kidney | 0 .00 RPM | 29 .56 RPM |
SRP007412_liver | 0 .00 RPM | 16 .12 RPM |
SRP007412_testis | 0 .00 RPM | 32 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_3820 |