RetrogeneDB ID: | retro_mmul_1429 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:45288317..45288797(+) | ||
Located in intron of: | ENSMMUG00000001169 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2446 | ||
Ensembl ID: | ENSMMUG00000016898 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.62 % |
Parental protein coverage: | 63.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | QETPAISPSKRPRPAEEGGMQLRFARLSDHATAPTRGSARAAGYDLYSAYDYTIPPMEKALVKTDIQIAL |
.ETP.I.P.K....AEEG.MQL.FA.LS..AT..T.GS....GYDL..AYD.TIPP.EKA.VK..IQIAL | |
Retrocopy | EETPTITPGKQAWFAEEGSMQLHFASLSEQATTLTPGSTQPKGYDLDGAYDDTIPPTEKATVKMGIQIAL |
Parental | PSGCYGRVAPRSGLAAKYFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEE |
PSG.Y.R.AP.SGLAAK.FIDVG.GVIDEDY.GNVG.VLFNFGKEKF.V.K.DRIAQLICE.IF.PEIEE | |
Retrocopy | PSGFYRRGAPWSGLAAKHFIDVGTGVIDEDY*GNVGAVLFNFGKEKFKVRKSDRIAQLICE*IFNPEIEE |
Parental | VQALDDTERGSGGFGSTGKN |
VQALDD..R.S...GST.KN | |
Retrocopy | VQALDDANRHSEDLGSTRKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 14 .68 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 19 .91 RPM |
SRP007412_cerebellum | 0 .19 RPM | 12 .72 RPM |
SRP007412_heart | 0 .06 RPM | 16 .31 RPM |
SRP007412_kidney | 0 .12 RPM | 10 .09 RPM |
SRP007412_liver | 0 .00 RPM | 9 .82 RPM |
SRP007412_testis | 0 .15 RPM | 19 .71 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2699 |