RetrogeneDB ID: | retro_dnov_639 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | GeneScaffold_7083:280149..280560(-) | ||
| Located in intron of: | ENSDNOG00000016598 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DUT | ||
| Ensembl ID: | ENSDNOG00000024791 | ||
| Aliases: | None | ||
| Description: | deoxyuridine triphosphatase [Source:HGNC Symbol;Acc:3078] |
Retrocopy-Parental alignment summary:
>retro_dnov_639
AGCACTACCCCAGAGACCCCCGCCATTTCTCCCAGTAAGTGGGCCCAGCCTGTGGAGGAGGGCAGTGTGTGGATCCACTT
TGCTCAGCTTTCGGAGCACGCCACGGCCCCAACCAAGGGGTCCACATGAGCCGTGGGTTTTGACCTGTACAGTGCCTATG
ATTGTAGAATACCACCCATGGAGAAAGCCCTTGTGAAAACAGACATTCAGATAGCCCTTCCTTCTGGATGTCATGAAAGA
GTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTCCACAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAA
TGTTGGTGTTGTGCTTTTTAATTTTGGCAAAGAAAAGTTTGAAGTGAAAAAGGGTGATCAAATTGCACAGCTGATTTGTG
AATGGATTTTT
ORF - retro_dnov_639 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.99 % |
| Parental protein coverage: | 54.15 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | SLGPKTPAISPSKRARSAEEGGVRIRFVRLSEHATAPTKGSARAAGFDLYSAYDYTIPPMEKALVKTDIQ |
| S..P.TPAISPSK.A...EEG.V.I.F..LSEHATAPTKGS..A.GFDLYSAYD..IPPMEKALVKTDIQ | |
| Retrocopy | STTPETPAISPSKWAQPVEEGSVWIHFAQLSEHATAPTKGST*AVGFDLYSAYDCRIPPMEKALVKTDIQ |
| Parental | IALPSGCYGRVXXXXXXXXXXXXXXXXGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIF |
| IALPSGC..RV................GVIDEDYRGNVGVVLFNFGKEKFEVKKGD.IAQLICE.IF | |
| Retrocopy | IALPSGCHERVAPRSGLAAKHSTDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDQIAQLICEWIF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 32 .87 RPM |
| SRP012922_cerebellum | 3 .02 RPM | 13 .06 RPM |
| SRP012922_heart | 1 .39 RPM | 10 .44 RPM |
| SRP012922_kidney | 1 .10 RPM | 23 .27 RPM |
| SRP012922_liver | 0 .00 RPM | 3 .41 RPM |
| SRP012922_lung | 0 .46 RPM | 14 .36 RPM |
| SRP012922_quadricep_muscle | 0 .52 RPM | 7 .44 RPM |
| SRP012922_spleen | 0 .92 RPM | 73 .37 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_639 was not experimentally validated.