RetrogeneDB ID: | retro_dnov_639 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_7083:280149..280560(-) | ||
Located in intron of: | ENSDNOG00000016598 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUT | ||
Ensembl ID: | ENSDNOG00000024791 | ||
Aliases: | None | ||
Description: | deoxyuridine triphosphatase [Source:HGNC Symbol;Acc:3078] |
Percent Identity: | 72.99 % |
Parental protein coverage: | 54.15 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SLGPKTPAISPSKRARSAEEGGVRIRFVRLSEHATAPTKGSARAAGFDLYSAYDYTIPPMEKALVKTDIQ |
S..P.TPAISPSK.A...EEG.V.I.F..LSEHATAPTKGS..A.GFDLYSAYD..IPPMEKALVKTDIQ | |
Retrocopy | STTPETPAISPSKWAQPVEEGSVWIHFAQLSEHATAPTKGST*AVGFDLYSAYDCRIPPMEKALVKTDIQ |
Parental | IALPSGCYGRVXXXXXXXXXXXXXXXXGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIF |
IALPSGC..RV................GVIDEDYRGNVGVVLFNFGKEKFEVKKGD.IAQLICE.IF | |
Retrocopy | IALPSGCHERVAPRSGLAAKHSTDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDQIAQLICEWIF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 32 .87 RPM |
SRP012922_cerebellum | 3 .02 RPM | 13 .06 RPM |
SRP012922_heart | 1 .39 RPM | 10 .44 RPM |
SRP012922_kidney | 1 .10 RPM | 23 .27 RPM |
SRP012922_liver | 0 .00 RPM | 3 .41 RPM |
SRP012922_lung | 0 .46 RPM | 14 .36 RPM |
SRP012922_quadricep_muscle | 0 .52 RPM | 7 .44 RPM |
SRP012922_spleen | 0 .92 RPM | 73 .37 RPM |