RetrogeneDB ID: | retro_mmul_707 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214734850:4141..4665(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000029151 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2446 | ||
Ensembl ID: | ENSMMUG00000016898 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.9 % |
Parental protein coverage: | 68.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GELPKPGGCPAP-GQETPAISPSKRPRPAEEGGMQ-LRFARLSDHATA-PTRGSARAAGY-DLYSAYDYT |
G....P.G...P...ETPAISPSKRPRPAEE.G...LRFARLS.HATA.P..G.....G..DLYSAYDYT | |
Retrocopy | GSPRSPSGFATPCSGETPAISPSKRPRPAEESGCS<LRFARLSEHATA<PHPGLRTGRGLRDLYSAYDYT |
Parental | IPPMEKALVKTDIQIALPSGCYGRVAPRSGLA-AKYFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKG |
IPP.EKALVKTDIQIALPSG.YGRVAP.SGLA.AK.FIDVGAGVIDEDYRGNVG.VLFNFGKEKFEVKK. | |
Retrocopy | IPPGEKALVKTDIQIALPSGRYGRVAPQSGLA>AKHFIDVGAGVIDEDYRGNVGGVLFNFGKEKFEVKKC |
Parental | DRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN |
DRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGK. | |
Retrocopy | DRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 14 .68 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 19 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .72 RPM |
SRP007412_heart | 0 .06 RPM | 16 .31 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .09 RPM |
SRP007412_liver | 0 .04 RPM | 9 .82 RPM |
SRP007412_testis | 0 .08 RPM | 19 .71 RPM |