RetrogeneDB ID: | retro_dnov_2270 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_6006:94369..94844(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUT | ||
Ensembl ID: | ENSDNOG00000024791 | ||
Aliases: | None | ||
Description: | deoxyuridine triphosphatase [Source:HGNC Symbol;Acc:3078] |
Percent Identity: | 81.37 % |
Parental protein coverage: | 62.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KTPAISPSKRARSAE-EGGVRIRFVRLSEHATAPTKGSARAAGFDLYSAYDYTIPPMEKALVKTDIQIAL |
.TPAISPSK.AR.AE.EGGV.I....LSEHATAPT.GSARAAGFDLYSAYDYTIPPMEKALVKTDIQ.AL | |
Retrocopy | ETPAISPSKQARPAE<EGGVGISVSQLSEHATAPTQGSARAAGFDLYSAYDYTIPPMEKALVKTDIQTAL |
Parental | PSG-CYGRVXXXXXXXXXXXXXXXXGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE |
PS..CYGRV................GVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE | |
Retrocopy | PSD<CYGRVAPCSGLAAKHSIDVGTGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE |
Parental | EVQVLDVTERGSGGFGSTGKN |
EVQVLDVTERGSGGFGST.KN | |
Retrocopy | EVQVLDVTERGSGGFGSTRKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .39 RPM | 32 .87 RPM |
SRP012922_cerebellum | 0 .41 RPM | 13 .06 RPM |
SRP012922_heart | 0 .00 RPM | 10 .44 RPM |
SRP012922_kidney | 0 .00 RPM | 23 .27 RPM |
SRP012922_liver | 0 .00 RPM | 3 .41 RPM |
SRP012922_lung | 0 .15 RPM | 14 .36 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 7 .44 RPM |
SRP012922_spleen | 0 .34 RPM | 73 .37 RPM |