RetrogeneDB ID:

retro_ttru_1834

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_93673:11110..11587(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DUT
Ensembl ID:ENSTTRG00000015422
Aliases:None
Description:deoxyuridine triphosphatase [Source:HGNC Symbol;Acc:3078]


Retrocopy-Parental alignment summary:






>retro_ttru_1834
GAGGCACAAGTCATCTCCCCCAGCAAATGGGCCCGGCCTGCGGAGGAGGGCGGCATGCGGCTCCGCTTTGTCCGGCTTTC
GGAGCACGCCACCGCTCCGACCAAGGGGTCCGAGCGCGCCGCGGGCTATGACCTATACAGTGCCTGTGAATACACAGTAC
CACCTATGGAGAAAGCTCTTGTGAAAACAGACATTCAGATAGCTCTTCCTAATGGGTGCTATGGGAGAGTAGCTCCACGT
TCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATCATAGAGGAAATGTTGTTGTTGT
ACTGTTTAATTTTGGCAAAGAAAAGTTCGAAGTCAAAAAGGGTGATCAAATTGCACAGCTCATTTGTGAACGGATATTTT
ACCCAGAAATAGAGGAAGTTCAAGTTTTAGATGACACTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAAATAAT

ORF - retro_ttru_1834 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.71 %
Parental protein coverage: 64.63 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKAQVISPSKRARPAEKGGMRLRFVRLSEHATAPTKGSERAAGYDLYSAYDYTVPPMEKALVKTDIQIALP
.AQVISPSK.ARPAE.GGMRLRFVRLSEHATAPTKGSERAAGYDLYSA..YTVPPMEKALVKTDIQIALP
RetrocopyEAQVISPSKWARPAEEGGMRLRFVRLSEHATAPTKGSERAAGYDLYSACEYTVPPMEKALVKTDIQIALP
ParentalSGCYGRVAPRSGLAAKHFIYVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEV
.GCYGRVAPRSGLAAKHFI.VGAGVIDED.RGNV.VVLFNFGKEKFEVKKGD.IAQLICERIFYPEIEEV
RetrocopyNGCYGRVAPRSGLAAKHFIDVGAGVIDEDHRGNVVVVLFNFGKEKFEVKKGDQIAQLICERIFYPEIEEV
ParentalQVLDDTERGSGGFGSTGNN
QVLDDTERGSGGFGSTGNN
RetrocopyQVLDDTERGSGGFGSTGNN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1834 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1834 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 75 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000018731 retrocopy
Bos taurus ENSBTAG000000119983 retrocopies
Callithrix jacchus ENSCJAG000000018132 retrocopies
Dasypus novemcinctus ENSDNOG000000247918 retrocopies
Dipodomys ordii ENSDORG000000105601 retrocopy
Equus caballus ENSECAG000000159711 retrocopy
Felis catus ENSFCAG000000153503 retrocopies
Homo sapiens ENSG000001289516 retrocopies
Gorilla gorilla ENSGGOG000000056585 retrocopies
Macropus eugenii ENSMEUG000000063183 retrocopies
Myotis lucifugus ENSMLUG000000068422 retrocopies
Macaca mulatta ENSMMUG000000168986 retrocopies
Monodelphis domestica ENSMODG000000026873 retrocopies
Nomascus leucogenys ENSNLEG000000059962 retrocopies
Oryctolagus cuniculus ENSOCUG000000038621 retrocopy
Otolemur garnettii ENSOGAG000000288477 retrocopies
Pongo abelii ENSPPYG000000064542 retrocopies
Pan troglodytes ENSPTRG000000070442 retrocopies
Rattus norvegicus ENSRNOG000000072211 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000078111 retrocopy
Tarsius syrichta ENSTSYG000000126699 retrocopies
Tursiops truncatus ENSTTRG00000015422 2 retrocopies
retro_ttru_1834 , retro_ttru_585,
Vicugna pacos ENSVPAG000000047234 retrocopies



Copyright © RetrogeneDB 2014-2017