RetrogeneDB ID: | retro_pabe_3820 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:149609035..149609480(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUT | ||
Ensembl ID: | ENSPPYG00000006454 | ||
Aliases: | None | ||
Description: | deoxyuridine triphosphatase [Source:HGNC Symbol;Acc:3078] |
Percent Identity: | 63.46 % |
Parental protein coverage: | 61.11 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | SPSKRARPA-EEGGMQLRFA-RLSEHATAPTRGSARAAGYDLYSAYDYTILPMEKAVVKTDIQIALPSGC |
SPSK.A.P...EG.MQL.FA..LS.HA.A...GS...A.Y.LYSAY.YTI...E.A.VK.....ALP.GC | |
Retrocopy | SPSKQA*PT<QEGSMQLCFA<LLSKHAMALNQGSWLTADYNLYSAYNYTIPSTE*ALVKN----ALPAGC |
Parental | YGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQAL |
.G.VA..SGLAAKHF.D.GAGV.DE.YRGN.G.V..N.GKE.FEVKK.D.I.Q..CE.IFYP.I.EVQAL | |
Retrocopy | NG*VAQWSGLAAKHFTDTGAGVTDEVYRGNGGAVVLNLGKERFEVKKSDQITQVFCEWIFYP*I-EVQAL |
Parental | DDTERGSGGFGSTGKN |
D.TER.S.G.GSTGKN | |
Retrocopy | DETERPSEGLGSTGKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 19 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 22 .86 RPM |
SRP007412_heart | 0 .00 RPM | 13 .13 RPM |
SRP007412_kidney | 0 .00 RPM | 17 .27 RPM |
SRP007412_liver | 0 .00 RPM | 11 .69 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2974 |