RetrogeneDB ID: | retro_fcat_1526 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:57664934..57665290(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSFCAG00000030450 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:HGNC Symbol;Acc:10336] |
Percent Identity: | 75.83 % |
Parental protein coverage: | 88.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQIL-MPNIGYGSNKKTKHML |
AA.RPLVKPK..KKR.KK.I.HQSDR.VKIK..W.KPRG.DNRV.RRFKG.IL..P.I.Y.SNKKTKHML | |
Retrocopy | AAPRPLVKPKFGKKRAKKLIWHQSDRGVKIKHSWWKPRGTDNRVHRRFKGPIL<VPDIDYRSNKKTKHML |
Parental | PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI |
.S.FRKFLVHN.K.LEVLLMCNKSY..EIAHNVS.K...A.VERAAQLAI | |
Retrocopy | SSAFRKFLVHNIKKLEVLLMCNKSYGVEIAHNVSCKHLRALVERAAQLAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 135 .83 RPM |
SRP017611_liver | 0 .00 RPM | 69 .75 RPM |