RetrogeneDB ID: | retro_fcat_1847 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:41467300..41467689(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000022577 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSFCAG00000030450 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:HGNC Symbol;Acc:10336] |
Percent Identity: | 69.17 % |
Parental protein coverage: | 97.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKP-RGIDNRVRRRFKGQILMPNIGYGSNKKTKHML |
A.LRPLVK...VKKRTKKFIRHQ..R..K.......P.R.IDNRV.RR.KG.ILMP.IG..SNKKTKHML | |
Retrocopy | ATLRPLVKLNMVKKRTKKFIRHQTNR-SKLSATGTNP<RDIDNRVHRRLKGYILMPSIGFRSNKKTKHML |
Parental | PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEE |
P..FRKF.VHN.KEL..LLMCNKSYCAEI...VS.KN.K.I.ERAAQLA.RVTNPN..L.S.E | |
Retrocopy | PNCFRKFQVHNIKELDILLMCNKSYCAEIIRKVSYKNAKSILERAAQLA-RVTNPNTKLHSKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 135 .83 RPM |
SRP017611_liver | 0 .00 RPM | 69 .75 RPM |