RetrogeneDB ID: | retro_fcat_979 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:89562023..89562428(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSFCAG00000030450 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:HGNC Symbol;Acc:10336] |
Percent Identity: | 82.22 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML |
MA.LRPL.KPKI.KKRT.KFI.HQSD.YVKIKRNW.K.RGIDNRV.RR.KGQILMPN.GY.S..KTKH.L | |
Retrocopy | MATLRPLTKPKIIKKRTRKFIWHQSDLYVKIKRNWWKHRGIDNRVHRRYKGQILMPNTGYKSIRKTKHVL |
Parental | PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE |
PSGF.KF.VH.VKELEVLL.CNKSYC.EIAHNVSSKN.KAIVER.AQLAIRVTNPNARL.SE.NE | |
Retrocopy | PSGF*KFQVHKVKELEVLLLCNKSYCPEIAHNVSSKNHKAIVEREAQLAIRVTNPNARLHSEDNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 135 .83 RPM |
SRP017611_liver | 0 .00 RPM | 69 .75 RPM |