RetrogeneDB ID: | retro_fcat_1863 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:74576245..74576648(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000010014 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSFCAG00000030450 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:HGNC Symbol;Acc:10336] |
Percent Identity: | 74.07 % |
Parental protein coverage: | 99.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AALRPLVKPKIVKKRTKKFIRHQSDR-YVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML |
AALRPLVKPKIVK.RTK..I..QS...YVK.K..W.KPRGID.RV.RRFKGQILM.NI.YGSN..TKHML | |
Retrocopy | AALRPLVKPKIVKERTKNLILPQSEK>YVKMKHKWWKPRGIDDRVHRRFKGQILMLNIDYGSNQETKHML |
Parental | PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE |
P.GF..F.VH.VKELE.LLMCNKSYC.E.A..VSSKNRKAIVERAA.LAI.VT..NA.L.S.ENE | |
Retrocopy | PGGFWNFPVHDVKELEDLLMCNKSYCTELAPDVSSKNRKAIVERAASLAI*VTSSNAGLHSKENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 135 .83 RPM |
SRP017611_liver | 0 .00 RPM | 69 .75 RPM |