Parental gene:

RPL32, ENSCHOG00000013534

Aliases:None
Description:ribosomal protein L32 [Source:HGNC Symbol;Acc:10336]
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_19304:1677..6063(+)


>ENSCHOG00000013534
ATGGCTGCCCTCAGACCCCTCATAAAGCCCAAGATCGTCAAAAAGAGGACCAAGAAGTTTATCCGGCACCAGTCAGACCG
ATATGTCAAAATTAAACGTAACTGGAGGAAACCCAGAGGCATTGACAACAGGGTGCGGAGAAGATTCAAGGGCCAGATCT
TGATGCCCAACATTGGTTATGGGAGCAACAAGAAAACGAAGCACATGCTACCCAGTGGCTTCCGCAAGTTCCTGGTCCAC
AATGTCAAGGAGCTGGAAGTGCTGCTGATGTGCAACAAATCTTACTGTGCTGAGATTGCTCACAATGTTTCTTCCAAGAA
CCGCAAAGCCATCGTGGAACGAGCAGCCCAGCTGGCCATCAGAGTCACCAACCCCAATGCCCGGCTGCGCAGCGAAGAAA
ATGAATAG

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014763 ortholog_one2one 3 retrogenes
retro_acar_104, retro_acar_125, retro_acar_67,
Ailuropoda melanoleuca ENSAMEG00000004583 ortholog_one2one 26 retrogenes
retro_amel_1004, retro_amel_1041, retro_amel_1059, retro_amel_112, retro_amel_1274, retro_amel_1284, retro_amel_13, retro_amel_1394, retro_amel_1450, retro_amel_150, retro_amel_1651, retro_amel_168, retro_amel_1766, retro_amel_1827, retro_amel_1897, retro_amel_274, retro_amel_275, retro_amel_44, retro_amel_573, retro_amel_658, retro_amel_71, retro_amel_776, retro_amel_781, retro_amel_871, retro_amel_892, retro_amel_923,
Bos taurus ENSBTAG00000015283 ortholog_one2one 10 retrogenes
retro_btau_1102, retro_btau_1391, retro_btau_1568, retro_btau_1645, retro_btau_1728, retro_btau_1764, retro_btau_377, retro_btau_623, retro_btau_631, retro_btau_654,
Cavia porcellus ENSCPOG00000019967 possible_ortholog 2 retrogenes
retro_cpor_1241, retro_cpor_608,
Equus caballus ENSECAG00000007201 ortholog_one2one 4 retrogenes
retro_ecab_1115, retro_ecab_26, retro_ecab_369, retro_ecab_698,
Felis catus ENSFCAG00000030450 possible_ortholog 38 retrogenes
retro_fcat_1014, retro_fcat_1063, retro_fcat_1173, retro_fcat_1185, retro_fcat_1186, retro_fcat_1340, retro_fcat_1402, retro_fcat_144, retro_fcat_1515, retro_fcat_1526, retro_fcat_16, retro_fcat_1600, retro_fcat_1620, retro_fcat_1665, retro_fcat_1674, retro_fcat_1779, retro_fcat_1819, retro_fcat_1847, retro_fcat_1857, retro_fcat_1863, retro_fcat_191, retro_fcat_1912, retro_fcat_1981, retro_fcat_319, retro_fcat_357, retro_fcat_412, retro_fcat_435, retro_fcat_438, retro_fcat_499, retro_fcat_510, retro_fcat_660, retro_fcat_740, retro_fcat_745, retro_fcat_893, retro_fcat_936, retro_fcat_95, retro_fcat_979, retro_fcat_997,
Loxodonta africana ENSLAFG00000032737 possible_ortholog 1 retrogene
retro_lafr_14,
Myotis lucifugus ENSMLUG00000022528 possible_ortholog 6 retrogenes
retro_mluc_100, retro_mluc_1283, retro_mluc_173, retro_mluc_2224, retro_mluc_2256, retro_mluc_48,
Macaca mulatta ENSMMUG00000001340 possible_ortholog 6 retrogenes
retro_mmul_106, retro_mmul_117, retro_mmul_126, retro_mmul_79, retro_mmul_93, retro_mmul_95,
Mustela putorius furo ENSMPUG00000017189 possible_ortholog 4 retrogenes
retro_mputfur_121, retro_mputfur_76, retro_mputfur_8, retro_mputfur_85,
Mus musculus ENSMUSG00000057841 possible_ortholog 16 retrogenes
retro_mmus_1132, retro_mmus_1142, retro_mmus_1746, retro_mmus_2010, retro_mmus_2263, retro_mmus_2316, retro_mmus_2341, retro_mmus_2699, retro_mmus_3099, retro_mmus_3378, retro_mmus_3605, retro_mmus_385, retro_mmus_442, retro_mmus_496, retro_mmus_533, retro_mmus_985,
Nomascus leucogenys ENSNLEG00000004789 possible_ortholog 12 retrogenes
retro_nleu_1109, retro_nleu_125, retro_nleu_1452, retro_nleu_1642, retro_nleu_193, retro_nleu_224, retro_nleu_2808, retro_nleu_2809, retro_nleu_442, retro_nleu_497, retro_nleu_56, retro_nleu_603,
Otolemur garnettii ENSOGAG00000028498 possible_ortholog 24 retrogenes
retro_ogar_129, retro_ogar_1321, retro_ogar_1340, retro_ogar_1360, retro_ogar_1425, retro_ogar_1524, retro_ogar_160, retro_ogar_1683, retro_ogar_1766, retro_ogar_1833, retro_ogar_2032, retro_ogar_2412, retro_ogar_2416, retro_ogar_2515, retro_ogar_3247, retro_ogar_3384, retro_ogar_545, retro_ogar_56, retro_ogar_571, retro_ogar_776, retro_ogar_870, retro_ogar_891, retro_ogar_924, retro_ogar_973,
Pongo abelii ENSPPYG00000013391 possible_ortholog 2 retrogenes
retro_pabe_135, retro_pabe_98,
Rattus norvegicus ENSRNOG00000010746 possible_ortholog 4 retrogenes
retro_rnor_179, retro_rnor_27, retro_rnor_278, retro_rnor_327,
Sarcophilus harrisii ENSSHAG00000012782 ortholog_one2one 1 retrogene
retro_shar_580,
Sus scrofa ENSSSCG00000027637 possible_ortholog 9 retrogenes
retro_sscr_1001, retro_sscr_1054, retro_sscr_107, retro_sscr_1081, retro_sscr_165, retro_sscr_76, retro_sscr_793, retro_sscr_957, retro_sscr_989,
Ictidomys tridecemlineatus ENSSTOG00000026505 possible_ortholog 9 retrogenes
retro_itri_1294, retro_itri_1322, retro_itri_1465, retro_itri_1639, retro_itri_1715, retro_itri_1748, retro_itri_370, retro_itri_885, retro_itri_948,
Tupaia belangeri ENSTBEG00000012875 possible_ortholog 3 retrogenes
retro_tbel_3304, retro_tbel_47, retro_tbel_51,
Vicugna pacos ENSVPAG00000002594 possible_ortholog 1 retrogene
retro_vpac_17,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_152 91.85 100.00
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2. retro_chof_205 84.56 100.00
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3. retro_chof_276 81.88 100.00
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4. retro_chof_286 70.07 100.00
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5. retro_chof_313 82.05 86.67
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6. retro_chof_554 76.64 77.78
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7. retro_chof_585 90.37 100.00
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8. retro_chof_607 59.85 99.26
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9. retro_chof_758 86.67 100.00
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10. retro_chof_913 86.03 100.00
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11. retro_chof_1131 87.50 100.00
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12. retro_chof_1164 82.35 100.00
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13. retro_chof_1181 75.74 100.00
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14. retro_chof_1234 64.41 86.67
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15. retro_chof_1461 85.19 99.26
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16. retro_chof_1821 61.90 77.78
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17. retro_chof_1957 96.30 100.00
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18. retro_chof_2022 88.15 100.00
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19. retro_chof_2090 97.78 100.00
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20. retro_chof_2146 78.42 100.00
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21. retro_chof_2242 97.78 100.00
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22. retro_chof_2265 94.81 100.00
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23. retro_chof_2301 86.76 100.00
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24. retro_chof_2410 91.24 100.00
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25. retro_chof_2509 80.88 100.00
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26. retro_chof_2527 84.67 100.00
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27. retro_chof_2606 90.37 100.00
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Download FASTA sequences of all ENSCHOG00000013534 retrocopies