RetrogeneDB ID: | retro_fcat_499 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:99736508..99736909(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSFCAG00000030450 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:HGNC Symbol;Acc:10336] |
Percent Identity: | 71.85 % |
Parental protein coverage: | 99.26 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIG-YGSNKKTKHM |
MA.L.PLVKPKI.KKRT.KFI.HQSD.YVK.K....K.R..DN...R.FKGQIL.P.I..Y.S.KKT.H. | |
Retrocopy | MASL*PLVKPKIIKKRTRKFIWHQSDQYVKLKHSSWKLRATDNTL*RSFKGQILIPKIV<YRSKKKTRHI |
Parental | LPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEEN |
L.S.F.K.LVHNVKELEVLL.CNKSYCAE.AH.VSSKN.KA.VERAAQLAIRVTN.NARL.S.EN | |
Retrocopy | LFSAF*KCLVHNVKELEVLLTCNKSYCAEVAHSVSSKNHKATVERAAQLAIRVTNTNARLCSKEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 135 .83 RPM |
SRP017611_liver | 0 .00 RPM | 69 .75 RPM |