RetrogeneDB ID: | retro_mmul_79 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:17376919..17377327(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000029026 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1062 | ||
Ensembl ID: | ENSMMUG00000001340 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:RefSeq peptide;Acc:NP_001180502] |
Percent Identity: | 99.26 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML |
MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML | |
Retrocopy | MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML |
Parental | PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE |
PSGFRKFLVHNVKELEVLLMCNKSYCA.IAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE | |
Retrocopy | PSGFRKFLVHNVKELEVLLMCNKSYCAKIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 44 .15 RPM |
SRP007412_brain_prefrontal_cortex | 1 .03 RPM | 129 .94 RPM |
SRP007412_cerebellum | 0 .00 RPM | 26 .22 RPM |
SRP007412_heart | 0 .18 RPM | 42 .52 RPM |
SRP007412_kidney | 0 .12 RPM | 31 .45 RPM |
SRP007412_liver | 0 .12 RPM | 46 .63 RPM |
SRP007412_testis | 0 .00 RPM | 10 .06 RPM |