RetrogeneDB ID:

retro_mmul_79

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:8:17376919..17377327(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMMUG00000029026
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:MMU.1062
Ensembl ID:ENSMMUG00000001340
Aliases:None
Description:ribosomal protein L32 [Source:RefSeq peptide;Acc:NP_001180502]


Retrocopy-Parental alignment summary:






>retro_mmul_79
ATGGCCGCCCTCAGACCCCTTGTGAAGCCCAAGATCGTCAAAAAAAGAACCAAGAAGTTCATCCGGCACCAGTCAGACCG
ATATGTCAAAATTAAGCGTAACTGGCGGAAACCCAGAGGCATTGACAACAGGGTTCGTAGAAGATTCAAGGGCCAGATCT
TGATGCCCAACATTGGTTATGGGAGCAACAAAAAAACAAAGCACATGCTGCCCAGTGGCTTCCGGAAGTTCCTGGTCCAC
AACGTCAAGGAGTTGGAAGTGCTGCTGATGTGCAACAAATCTTACTGTGCCAAGATTGCTCACAATGTTTCTTCCAAGAA
CCGCAAAGCCATCGTGGAAAGAGCTGCCCAGCTGGCCATCAGAGTCACCAACCCCAACGCCAGGCTGCGCAGTGAAGAAA
ATGAGTAG

ORF - retro_mmul_79 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.26 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML
MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML
RetrocopyMAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML
ParentalPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE
PSGFRKFLVHNVKELEVLLMCNKSYCA.IAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE
RetrocopyPSGFRKFLVHNVKELEVLLMCNKSYCAKIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .11 RPM 44 .15 RPM
SRP007412_brain_prefrontal_cortex 1 .03 RPM 129 .94 RPM
SRP007412_cerebellum 0 .00 RPM 26 .22 RPM
SRP007412_heart 0 .18 RPM 42 .52 RPM
SRP007412_kidney 0 .12 RPM 31 .45 RPM
SRP007412_liver 0 .12 RPM 46 .63 RPM
SRP007412_testis 0 .00 RPM 10 .06 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_79 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_79 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_79 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 15 parental genes, and 172 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000147633 retrocopies
Ailuropoda melanoleuca ENSAMEG0000000458326 retrocopies
Bos taurus ENSBTAG0000001528310 retrocopies
Choloepus hoffmanni ENSCHOG0000001353427 retrocopies
Equus caballus ENSECAG000000072014 retrocopies
Felis catus ENSFCAG0000003045038 retrocopies
Loxodonta africana ENSLAFG000000327371 retrocopy
Macaca mulatta ENSMMUG00000001340 6 retrocopies
Mustela putorius furoENSMPUG000000171894 retrocopies
Nomascus leucogenys ENSNLEG0000000478912 retrocopies
Otolemur garnettii ENSOGAG0000002849824 retrocopies
Rattus norvegicus ENSRNOG000000107464 retrocopies
Sarcophilus harrisii ENSSHAG000000127821 retrocopy
Sus scrofa ENSSSCG000000276379 retrocopies
Tupaia belangeri ENSTBEG000000128753 retrocopies



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